Sequence
atgc intronic sequence ATGC exonic sequenceGGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G023528_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g03740.1 (Oryza sativa), 5'ss of exon 4
GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttggggatcatatggcatgt--gatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcag
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GCCAAAAATCCGGAGGTCAGGAGCTTATTGGAGGACTAGATTGTACTGTCCACCGGAACTTTTTTGGGAGCCAGgtaactttgaggatcgtgttctctgtttgatggccggagcagttttcactatcatttctattgtctcttcaattttattttatttttgag-atgaatac---actctcttgcag
upper sequence: GRMZM2G023528_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0004g03000.t01 (Vitis vinifera), 5'ss of exon 4
GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcag
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GACAGAAAACAGGTGGGCAGGAACTAGTTGGGGGCCTTGATTGTACAGTTCACCGGAACTTCTTTGGCAGTCAGgtaatgatatacattctgtgtcct-tgact-tcgtcttactg----tcacaaagataaaatgtt-gta-ttgaaaacatgcaaaaaaat-taaaaatcaaactgatatg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78180241|gb|DV550614.1|DV550614EST: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG ACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... ttcattgcagACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAAAAAACAGGGGGGCAGGAACTTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcag
- - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - GAGGAT