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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttgattcttaatgaaggacagtctttagcagtatgaatatttacttgttattcctttatactgtctaatgaataacctgactgttggtttataaacacatgaacaaaag

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 4
GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttgattcttaatgaaggacagtctttagcagtatgaatatt--tacttgttattcctttatactgt-ctaatgaataacctgactgttggtttataaacacatgaacaaaag-
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| || ||| |  |  |||   |   ||| ||||| ||| | ||  ||||   |  |  |||   ||||  |||  ||| |||| |||| || ||||| ||  ||| || |||   
GGCTGCCGCTAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGCCTCATGTCTACTCCAGCTGTATCTGCTGTTATCCGTGAAAGAGTTGGTGCAGATgtaagatttatttt--acaaagattaactttttgcagtgtgactgttagtactcactgcttattttctctgtgttaacaaattaccttactggtgctttatcaaatcatcaaaaaatag

upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaag-tttgattcttaatgaaggacagtctttagcagtatgaatatttacttgttattcctttatactgt-ctaatgaataacctgac------tgttggtttataaacacatgaacaaaag------------
||| || || ||||| ||| ||||||| ||||||||  |||||| |||  | || |||||||||||||| ||||| || |||||||||   || || ||||| || |||  ||||  |||        | |   |   | |   | |||  || || |   | | | || |  |  || || ||   |       || ||||||  |   || | | |  |              
GGCAGCAGCTAATGGTGTACGACGTGTGTGGGTTGGTAAAAACACTCTGTTATCAACTCCTGCTGTATCAGCTGTGATTCGTGAAAGATCAGGGGCTGATgtgagatttctttctctatgctcatggttgtagtgacattttgttttttgttttttttggttatttgctatgtttgtgcatgacgcaaaatgtaatgatggttttgagttacttaaccccagtctccgattacag

upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttgattcttaatgaaggacagtctttagcagtatgaatatttacttgttattcctttatactgtctaatgaataacctgac-tgttggtttataaacacatgaacaaaag----
||| || || ||||| || |||||||| |||||||| |||||||||||  | || |||||||| ||||| ||| | || ||||||||| | || || ||||| || |   ||| |    |   | | |  |||    | |      ||  |   ||   || |  | ||| |     ||    |||| || ||    |  ||| |  || | ||      
GGCAGCAGCTAATGGTGTTAGACGTGTGTGGGTTGGTCAAAACAGTCTGCTATCAACTCCTGCAGTATCAGCTATTATTCGTGAAAGAGTAGGGGCTGATgtgagatatcttcctctaaactcatactacttacttttctcttgggttgttatctaaggctatgca-tgtttgcaacatgtaatgacgtgatgagaaactaacccgagatccaatttcag

upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 5
GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagt---ttgatt--------------cttaatgaaggacagtcttta--gcagtatgaatatttact-------tgttattcctttatactgtctaatgaataacctgactgttggtttataaacacatgaacaaaag---------------------------
||| ||||| |||||||| |||  ||| |||||||| |||||  |  |  | || |||||||||||||| |||||||||||||||||| | ||   ||||||||||   |||  |              |||| || | | |  ||||    || | | |       ||        | | |||  |  ||| ||| |  |     |  |     | |||| | ||  |||  || ||                              
GGCAGCTGCAAATGGAGTGAGATCTGTCTGGGTTGGTCAAAATGGGTTGCTTTCAACTCCTGCTGTATCAGCTGTCATCCGTGAAAGAGTGGGGAAAGATgtaagtaatttggcttcaactatctacatcttactgtatgtccttcttcgccgccgcacgtccccccacccccccagtttcatttttaaatattgtttgcttg--cagttaggaataggttgagaacaacaaaaataatgaatttgtatatgtactatattaaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519862|gb|FL340800.1|FL340800
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211510167|gb|FL335461.1|FL335461
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTAACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31353596|gb|CD437953.1|CD437953
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211114423|gb|FL039504.1|FL039504
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211245824|gb|FL313144.1|FL313144
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAAACCCAGG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAA-CCCAGG
EST: gi|211409150|gb|FL322197.1|FL322197
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211348782|gb|FL410664.1|FL410664
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211514328|gb|FL308791.1|FL308791
EST:     TGTCTACTCCTGCTGNATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGNCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211320241|gb|FL338456.1|FL338456
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211430936|gb|FL367558.1|FL367558
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211143693|gb|FL324984.1|FL324984
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211092187|gb|FL375383.1|FL375383
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211515016|gb|FL344872.1|FL344872
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211420086|gb|FL350025.1|FL350025
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211445897|gb|FL403744.1|FL403744
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211137320|gb|FL356389.1|FL356389
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211177446|gb|FL359119.1|FL359119
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211217606|gb|FL408377.1|FL408377
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211012104|gb|FL418130.1|FL418130
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211048105|gb|FL385535.1|FL385535
EST:     CTACTCCCTGCTGTATCTGGCTGTCATCCGTGAAAAGAATTGGTGCAGAT                         GGGATCAAAGGCTTACTGGTTGCCTTCATCCTTAACAGCGAGCCCATAA
genomic: CTACTCC-TGCTGTATCTG-CTGTCATCCGTGAAA-GAATTGGTGCAGATgtaagtttga ... tgaacaaaagGG-ATCAAAGGCT-ACTGGT-GCCTTCATC-TTGACAGCGAGCC-ATAA
EST: gi|148931122|gb|EC873792.2|EC873792
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211114429|gb|FL039510.1|FL039510
EST:     TGTATACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAAACCCAGG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAA-CCCAGG
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211220603|gb|FL338340.1|FL338340
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211317021|gb|FL376013.1|FL376013
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211009326|gb|FL418558.1|FL418558
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211260711|gb|FL355112.1|FL355112
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211058754|gb|FL342287.1|FL342287
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211030301|gb|FL309717.1|FL309717
EST:     AGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211030302|gb|FL309718.1|FL309718
EST:     GTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: GTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATT-GGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211443060|gb|FL370676.1|FL370676
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211099119|gb|FL353128.1|FL353128
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211491900|gb|FL325739.1|FL325739
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|213173746|gb|FM188063.1|FM188063
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211114426|gb|FL039507.1|FL039507
EST:     AGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211419246|gb|FL320476.1|FL320476
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211383896|gb|FL356595.1|FL356595
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211477070|gb|FL423432.1|FL423432
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGG
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211121113|gb|FL321102.1|FL321102
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211134618|gb|FL369500.1|FL369500
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCCGAGCCATAACCCAGG
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGC-GAGCCATAACCCAGG
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211200656|gb|FL341863.1|FL341863
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|149083128|gb|EE172391.2|EE172391
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211477530|gb|FL326610.1|FL326610
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
EST: gi|211462418|gb|FL327911.1|FL327911
EST:     TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGAT                         GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT
genomic: TGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttga ... tgaacaaaagGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATgtaagtttgattcttaatgaaggacagtctttagcagtatgaatatttacttgttattcctttatactgtctaatgaataacctgactgttggtttataaacacatgaacaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT