Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttgttggacataaaatcagctgagcttgctcccaagtagagttgcctgagtttttactaactgaatgtgttggttgggtccag

Basic information

species Zea mays
transcript GRMZM2G022997_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022997_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g48300.1 (Oryza sativa), 5'ss of exon 29
GTTCCTTTGGAAGATGAGAAGAGGTTCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttgtt-----------------ggacataaaatcagctgagcttgctcccaagtagagttgcctgagtt-------tttactaactgaatgtgttggttgggtccag
|||||||| ||||||||||| |||||| ||||||||||||| || |||||||| || ||||| ||||| |||||||||||| |||                   |||||| |  || | || |||||||| | | ||||      ||||          ||||| |   ||| | | | || |||||||
GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTGGTGCTGATCTTAGTCCTCTAGAGgtgatgtttgcaccttcttttgcaacgcaggacatgagctccggtgtgcttgctcgctactagatgcatttgagcaattgagacttactcatgtaatatat-gttttggtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211369658|gb|FL316930.1|FL316930
EST:     TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG                         GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
EST: gi|40286921|gb|CK327313.1|CK327313
EST:     TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG                         GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
EST: gi|211101728|gb|FL471161.1|FL471161
EST:     TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG                         GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA