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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAACTGAGGCATTGTTGACAAATGATATCCTTCTAAGTGATGGGATTCAGAGTCCAAGTAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAGgttggctgttatctggaaaagttggtgtcaatgacaaattctatgttctgtacctgaaatttatccttctaccatcatggaattagtccggtctggtctt...

Basic information

species Zea mays
transcript GRMZM2G021846_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 4
TCAAACTGAGGCATTGTTGACAAATGATATCCTTCTAAGTGATGGGATTCAGAGTCCAAGTAGTGTTTCTGCAAAATTAGAAGATTGTACTAACC---ACAAGgttggctgttatctggaaaagttggtgtcaatgacaaattctatgttctgtacctgaaat-ttatccttctaccatcatggaatta-gtccggtctggtctt--
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---AACTGGAGCTTTATGGACAAATGACATGCTTCTCAGTGATGGCATCCAGAGTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcactaaccaggtcgaatcggt----atgctagaatatttgtcccaccaatgaattattatgtattcccccccagaaaatgaagtgtgttgtgtttttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926116|gb|CF030928.1|CF030928
EST:     ATTGTACTAACCACAAG                         AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
genomic: ATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
EST: gi|13237210|gb|BG355224.1|BG355224
EST:     GAGTCCAAGCTAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAG                         AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCACAATTCCGGA
genomic: GAGTCCAAG-TAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA