1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCTATGTATACAACTCTACGACGCACAACAGTCGTGTTTACAATGACAATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatatggatatttgttctggtggctggatcttataattaccaataaacagctagtgtaagtttcatttcgtttaatgcatatctgccttaggcag...
species | Zea mays |
transcript | GRMZM2G020976_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCAC-CCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGEST: gi|74233566|gb|DT641480.1|DT641480
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTG
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|31353270|gb|CD437627.1|CD437627
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAGGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|71767957|gb|DR965894.1|DR965894
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|71420101|gb|DR805011.1|DR805011
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|78076866|gb|DV505300.1|DV505300
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|71420100|gb|DR805010.1|DR805010
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|31355902|gb|CD440259.1|CD440259
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAGGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCEST: gi|148947455|gb|EC892886.2|EC892886
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTATGTATACAACTCTACGACGCACAACAGTCGTGTTTACAATGACAATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatatggatatttgttctggtggctggatcttataattaccaataaacagctagtgtaagtttcatttcgtttaatgcatatctgccttaggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaca