1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgctttaacctgaatcccttgcattgtatggttagtacttaatttcatatctcacgtgtgttgtgttatgggttctgttttcctgttttggatc...
species | Zea mays |
transcript | GRMZM2G019986_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|149014076|gb|EE043603.2|EE043603
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|91875962|gb|EB405919.1|EB405919
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|78089272|gb|DV517646.1|DV517646
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|148951106|gb|EC896776.2|EC896776
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|148991365|gb|EE032856.2|EE032856
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|78112754|gb|DV531148.1|DV531148
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|148935256|gb|EC879293.2|EC879293
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGAEST: gi|149102322|gb|EE188185.2|EE188185
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
EST: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCA ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
genomic: GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgct ... ggggcatcagATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACTCGTCTGGGAAGCTCAGATCCTAAGGGATGTTTCAgtaagttgctttaacctgaatcccttgcattgtatggttagtacttaatttcatatctcacgtgtgttgtgttatgggttctgttttcctgttttggatc
- - - - - - - AGCTCA