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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccacttattttagttgaattactaatgctgtgctttgagattttatttcagcaactgcactttttttttgagcgcaaaactgcacttctgcgcct...

Basic information

species Zea mays
transcript GRMZM2G019358_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211345086|gb|FL234327.1|FL234327
EST:     CTAGAAATGTAGACAGGGCAAG-AGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGG
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGG
EST: gi|211349887|gb|FL234353.1|FL234353
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|211345091|gb|FL234332.1|FL234332
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|148936820|gb|EC880961.2|EC880961
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|211345089|gb|FL234330.1|FL234330
EST:     CTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGA
EST: gi|211347484|gb|FL234337.1|FL234337
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAG
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAG
EST: gi|211345087|gb|FL234328.1|FL234328
EST:     CTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAGGATACACTTNGATCCTAAGCTATTCAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTT-GATCCTAAGCTATTCAA
EST: gi|211349886|gb|FL234352.1|FL234352
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccacttattttagttgaattactaatgctgtgctttgagattttatttcagcaactgcactttttttttgagcgcaaaactgcacttctgcgcct

- - - - - - - - - - AAGGAG
- - - - - - - - - - - GGAGCA