1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGAACTGGTTTTGCTGGATGGTAAACTAAAGCAGATAACGCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAGgttgatgtctctcctcgactttttctgtgtttggcttgataaatataaaggtcactaaatgtaatggaattgtttagagttctgtttaagtgatatgcatccgtttttcag
species | Zea mays |
transcript | GRMZM2G018951_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATAACGCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGNAAG GGAATATAAGGGTGTTCTGTCGTGTGAGGCCTTTEST: gi|28873343|gb|CB329345.1|CB329345
genomic: GATAACGCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAGgttgatgtct ... cgtttttcagGGAATATAAGGGTGTTCTGTCGTGTGAGGCCTTT
EST: CTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAG GGAATATAAGGGTGTTCTGTCGTGTGAGGCCTTTTCACCATGAAGAAAATTEST: gi|28910659|gb|CB331549.1|CB331549
genomic: CTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAGgttgatgtct ... cgtttttcagGGAATATAAGGGTGTTCTGTCGTGTGAGGCCTTTTCACCATGAAGAAAATT
EST: GCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAG GGAATATAAGGG-GTTCTGTCGTGTGAGGCCTTTTCACCATGAAGAAAATT
genomic: GCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAGgttgatgtct ... cgtttttcagGGAATATAAGGGTGTTCTGTCGTGTGAGGCCTTTTCACCATGAAGAAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTGGTTTTGCTGGATGGTAAACTAAAGCAGATAACGCTGCAGAGGAGGCAGTCACTAAATAACTATTTGGATCTGAAAGgttgatgtctctcctcgactttttctgtgtttggcttgataaatataaaggtcactaaatgtaatggaattgtttagagttctgtttaagtgatatgcatccgtttttcag
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG