1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCTGAGATGCTCGTCAACCTTGGCGTTCCCTGGGTCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatccatgtcacaacttatgcaacatgtcttttgtgttattttcattgcgcttgtaatgtgtgcatatttttatctgggactatgttgtatctact...
species | Zea mays |
transcript | GRMZM2G018177_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|18162555|gb|BM332394.1|BM332394
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: GGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|32908102|gb|CF012915.1|CF012915
genomic: GGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|30087627|gb|CB885833.1|CB885833
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|60352667|gb|DN219640.1|DN219640
genomic: TCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: GAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTG-TGGAAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATEST: gi|18165365|gb|BM335204.1|BM335204
genomic: GAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGG-AGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCAT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|211519675|gb|FL104729.1|FL104729
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|76012320|gb|DT939490.1|DT939490
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|18165667|gb|BM335506.1|BM335506
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: GCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|91874218|gb|EB404175.1|EB404175
genomic: GCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|211522699|gb|FL104754.1|FL104754
genomic: TGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|84908490|gb|DW404368.1|DW404368
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTATGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|24765545|gb|CA400704.1|CA400704
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|61118536|gb|DN559497.1|DN559497
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCACTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTATGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|22819873|gb|BU499963.1|BU499963
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|60341170|gb|DN208143.1|DN208143
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|60397817|gb|DN230633.1|DN230633
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: AGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|211534317|gb|FL091476.1|FL091476
genomic: AGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|9733498|gb|BE512130.1|BE512130
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|17929542|gb|BM266502.1|BM266502
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: AGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|18175195|gb|BM350583.1|BM350583
genomic: AGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: GCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|76013518|gb|DT940688.1|DT940688
genomic: GCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATTEST: gi|91056160|gb|EB166578.1|EB166578
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
EST: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAG TTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
genomic: TCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatcca ... tggatgccagTTTGTTGGAGACAAGGTTGCTTTTGCTCTGTCTCAGGGACTAAAGGTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAGATGCTCGTCAACCTTGGCGTTCCCTGGGTCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatccatgtcacaacttatgcaacatgtcttttgtgttattttcattgcgcttgtaatgtgtgcatatttttatctgggactatgttgtatctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA