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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgatacctgataattggaattgcaaaacaatcagttcattcttagatgatttttatatatttaatgtttttaaagtgtaaggcgaggcaaggcgt...

Basic information

species Zea mays
transcript GRMZM2G017634_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017634_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g12220.1 (Oryza sativa), 5'ss of exon 5
GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtg-atacctgataattggaattgcaaaacaatcagttcattcttagatgatttttatatatttaatgtttttaaagtgtaaggcgaggcaaggcgt-
|||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||||||||||||||||  |||||||| || |||| ||||||||||||  ||  |||||  ||  |||   ||   ||| |   ||||||||||    |   ||    | | |  | |  ||      |||     || |    
GGTGATAAACAAAGTGGTAGTAATGATAGTGGATCAACATCTGCGGGTCAATCTCCACGACTTAAATCTTTTGCCAGTAGATCTTTTGTGGCCAATGATgtaagtctatgtctgattttt--aatcataatgtaattaacacattcttagacttctacaatcccatcatttatgtcgaaaaccctggctttctaatgtcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354452|gb|CD438809.1|CD438809
EST:     AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: gi|24769296|gb|CA404425.1|CA404425
EST:     AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: gi|33467010|gb|CF244059.1|CF244059
EST:     AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: gi|31355617|gb|CD439974.1|CD439974
EST:     AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC