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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgatacctgataattggaattgcaaaacaatcagttcattcttagatgatttttatatatttaatgtttttaaagtgtaaggcgaggcaaggcgt...

Basic information

species Zea mays
transcript GRMZM2G017634_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017634_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g12220.1 (Oryza sativa), 5'ss of exon 5
GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtg-atacctgataattggaattgcaaaacaatcagttcattcttagatgatttttatatatttaatgtttttaaagtgtaaggcgaggcaaggcgt-
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GGTGATAAACAAAGTGGTAGTAATGATAGTGGATCAACATCTGCGGGTCAATCTCCACGACTTAAATCTTTTGCCAGTAGATCTTTTGTGGCCAATGATgtaagtctatgtctgattttt--aatcataatgtaattaacacattcttagacttctacaatcccatcatttatgtcgaaaaccctggctttctaatgtcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91055239|gb|EB165657.1|EB165657
EST:     AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: gi|37390609|gb|CF632538.1|CF632538
EST:     AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT                         GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGTC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC