Sequence
atgc intronic sequence ATGC exonic sequenceCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtcttcagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 5'ss of exon 3
----CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtcttcagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
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ACAGCTCTTCCTGCTCTTCCTGTCTTTCTCCTTGGCTGTTGAAGCACTACATGCATTTATGCAAGATGAGTCTGAGCATAAgtaaatgccttttcctttttgtttagtgtaatataatcccaatcgttttggctaatattattattcttctaaaactaaaatatatatatatactttcag-------------------
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g58580.5 (Oryza sativa), 5'ss of exon 1
-----------------------CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtcttcagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
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TGCTTCTTCTTTGTTCTAGACAGCTCTTCCTGCTCTTCCTGTCTTTCTCCTTGGCTGTTGAAGCACTACATGCATTTATGCAAGATGAGTCTGAGCATAAgtaaatgccttttcctttttgtttagtgtaatataatcccaatcgttttggctaatattattattcttctaaaactaaaatatatatatatactttcag-------------------
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G30140.1 (Glycine max), 5'ss of exon 4
CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgc-catttatgtcaaatgtcttcagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
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CTGTTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAAgtaagtttgtgcccacaatgaatgtcgtctgtcagtattttattacttacaattaaatattttacatatccagcaacaaaaaagatagacag-tgattttt------------------
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G33030.1 (Glycine max), 5'ss of exon 4
CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgc-catttatgtcaaatgtcttcagatgggatggtagctgtttctg--ctgttactagtctttctccactgcctttt-catgctgacaccttatcttctaaaaaactgtcttccag
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CTATTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAAgtaagtttgtacacacaatgactgttgtctgtcagtatg-taattacttacaaattacaattaagtattttacatatccagcaacaaagagataggcagtg---------------------
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: AT3G12100.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagt-gccatttatgtcaa--atgtcttcagatgggatggtagctgtttct-gctgttactagtctttctccact-gccttttcatgctgacacct----tatcttctaaaaaactgtcttccag----
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CTGTTCCTTATGTTCATGTCATTCTCCTTAGCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCATAAgtaagttgatattttcacaaatgacatgcctaggagtttctatatatatctctagcacttactaagtttacagtacttgttccctcttgttcctttcagtagtgtgatttactgagatttcctttatgtag
upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtctt---cagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
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CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagt--tgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76014355|gb|DT941525.1|DT941525EST: TTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA GCATTATCTGATTGTTTCTGCTGTCACCAATCTTTTGGTTAATTTACTTGG
genomic: TTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgcca ... tgtcttccagGCATTATCTGATTGTTTCTGCTGTCACCAATCTTTTGGTTAATTTACTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtcttcagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
- - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA