1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggttttgtctgttgtcttttgtggaattacttgttctatatggatttctgcattcaggttttaatttggagacccatataccttgattttatg...
species | Zea mays |
transcript | GRMZM2G017329_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|84980293|gb|DW530642.1|DW530642
genomic: TCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|78075157|gb|DV503591.1|DV503591
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|71760533|gb|DR958470.1|DR958470
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|67026173|gb|CO454922.1|CO454922
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|78083868|gb|DV512261.1|DV512261
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: ATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|16925613|gb|BM078681.1|BM078681
genomic: ATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCATEST: gi|32941316|gb|CF046135.1|CF046135
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
EST: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG GCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
genomic: GGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggt ... tttacaatagGCAGGAGTTGGTCTTCTTGGATAATGAAATCGTGTTCAATGAGGCCATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAGgtaagttggttttgtctgttgtcttttgtggaattacttgttctatatggatttctgcattcaggttttaatttggagacccatataccttgattttatg
- - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG