1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCCATATAATGGAAACCATGATATGATCTCAACCAATACCCTACAAAACATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGGgtagtgctcgggaattataatatactttttatgatatgctagtaaatgtgtgttttcttatggtttggacttgttatttatgacag
species | Zea mays |
transcript | GRMZM2G017254_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGG CAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCEST: gi|22490953|gb|BU050876.1|BU050876
genomic: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGGgtagtgctcg ... tttatgacagCAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGC
EST: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAAGTGATGCTGCGG CAAGCACATATTTGGAATCAAAGGATGAAGTTCATGATTTTEST: gi|60350389|gb|DN217362.1|DN217362
genomic: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGGgtagtgctcg ... tttatgacagCAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTT
EST: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAAGTGATGCTGCGG CAAGCACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCTTGC
genomic: CATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGGgtagtgctcg ... tttatgacagCAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCATATAATGGAAACCATGATATGATCTCAACCAATACCCTACAAAACATGGCTGGAATTCAGACAGGAGCAGCTTGGCTTGAAACTGATGCTGCGGgtagtgctcgggaattataatatactttttatgatatgctagtaaatgtgtgttttcttatggtttggacttgttatttatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC