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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattcccttgtattttattatattgactttattgtactgcatggcttgatatcagcattatttcttgatgtatttattgctttagaacattctttct...

Basic information

species Zea mays
transcript GRMZM2G017089_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 6
TGAATCTACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattcccttgtattttattatattgactttattgtactgcatggcttgatatcagcattatttcttgatgtatttattgctttagaacattctttct--
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GGATTCAACGATACCAGGCAAGAATACAACTATAACAATTCCTGGTTCATCTGACAGgtttgttcacttatctttgctttaatcgttgatatgcagctcaaacacttgatgttgccccaatgtg--gctaatccaaaaacagaaatgccttcaattgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013838|gb|DT941008.1|DT941008
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|211485186|gb|FL175528.1|FL175528
EST:     ACCATACCTGGCAAAAATACA-CTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGGCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|76013076|gb|DT940246.1|DT940246
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGC
EST: gi|78085590|gb|DV513983.1|DV513983
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|78087205|gb|DV515598.1|DV515598
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|211104567|gb|FL375458.1|FL375458
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGG
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGG
EST: gi|6021220|gb|AW066148.1|AW066148
EST:     ACCATACCTGGCAAAAA-ACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|211482306|gb|FL175513.1|FL175513
EST:     ACCATACCTGGCAAAAATACA-CTCTGTCAATTCCTGGATCATCTGACAG                         ATTT-CTACATC-GCACTGATGGAAAGGATAC-TAGTAGATGGC-ACGGNC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|78089068|gb|DV517459.1|DV517459
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGGCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|148951460|gb|EC897185.2|EC897185
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGAAGGGCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|211479425|gb|FL175508.1|FL175508
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGAATG-CCACGGC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGA-TGGCCACGGC
EST: gi|94478034|gb|EB706992.1|EB706992
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|149079798|gb|EE168796.2|EE168796
EST:     CATACCTGGCAAAAAATACA-CTCTGTNCA-TTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: CATACCTGGCAAAAA-TACAACTCTGT-CAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|148950913|gb|EC896543.2|EC896543
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|148962621|gb|EE013511.2|EE013511
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGTAGATGGCCACGGCC
EST: gi|76019935|gb|DT947105.1|DT947105
EST:     ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAG                         ATTTTCTACATCCGCACTGATGGAAAGGATACCTAGT
genomic: ACCATACCTGGCAAAAATACAACTCTGTCAATTCCTGGATCATCTGACAGgtttattccc ... tatctcacagATTTTCTACATCCGCACTGATGGAAAGGATACCTAGT