1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCTAAGGGAGGGGTCCCAACTTCAAGAATCCTTGCCCAAGAATGTGGACCCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgcccttccctctccaaggccaccagttacctgctgtttgagctctgtgacagaattgtctcttctttcgttacagatggtctaattacctttgcctgattacactgtag
species | Zea mays |
transcript | GRMZM2G016886_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATAC GTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGGEST: gi|67010565|gb|CO439314.1|CO439314
genomic: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgccc ... tacactgtagGTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGG
EST: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATAC GTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGGEST: gi|6012672|gb|AW062109.1|AW062109
genomic: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgccc ... tacactgtagGTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGG
EST: CCAGTACTTTGGTCCTGTGAAA-CAAGAGAAAGGAAGAAGAGCTGGATAC GTTCTGTCGAAACATAEST: gi|32912528|gb|CF017340.1|CF017340
genomic: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgccc ... tacactgtagGTTCTGTCGAAACATA
EST: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATAC GTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGG
genomic: CCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgccc ... tacactgtagGTTCTGTCGAAACATAACAAGGCACAAGGGCTCTCCAGCAAGGACAGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAAGGGAGGGGTCCCAACTTCAAGAATCCTTGCCCAAGAATGTGGACCCAGTACTTTGGTCCTGTGAAATCAAGAGAAAGGAAGAAGAGCTGGATACgtatgtgcccttccctctccaaggccaccagttacctgctgtttgagctctgtgacagaattgtctcttctttcgttacagatggtctaattacctttgcctgattacactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA