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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat...

Basic information

species Zea mays
transcript GRMZM2G016330_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g06410.1 (Oryza sativa), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaatt-----atctgctgctctcctatttcactgatatatt-ttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat
||| || |||||| ||||||||||||||||||||||  | ||||| || || ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||  || || |        ||  | |||||| || |||  |   |  ||  |||  || | |  || || |   |     || | | |   | |||        
GGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGgtttgttctttgaggcttcgaattaggtgctcttctgtttatccactgaatgatttcgtgaagcctagcttaatctcaattgtgtcgagtatgtaactgt------

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G38690.2 (Glycine max), 5'ss of exon 4
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat--------
   ||| || ||| | |||||    |||||||| ||| |||| || || ||||| ||  | ||||| ||||||||||||||||||||||| || ||||| ||  ||| | ||  || |    |  | |  ||  |   || |      | | ||     | |||  |||| |||  | ||    | || | | |   |||        
TCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAAgtg-agttgcttctttttgctttaattttatagctttttgtttggaaatgtttgtt---ggggt--aatatttgtttccct--cgtttaagtaaacaaatgacagttc

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G41500.1 (Glycine max), 5'ss of exon 2
GGTTTCGTCGGCG-TTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat-----
   ||| |||||  || || ||    ||||| || |||||||| || || || ||  |  | ||||||||||||||||||||||| || || |||||||| ||     || ||  || |    | || |  | |||   |   | || | || || |   | |||  | ||||||  | ||   |   | | | |   |||     
-CATTCATCGGCACTTTTTTTTTCAATACAATACTGCATTGGGACCCCCTTACCGTATTTTGGTGGATACCAACTTCATCAATTTTTCCATCCAGAATAAAgtgagtgcgctttgttgtgc-tttctattttttttttttataacatatgttgtggacttgtggt--agtacttgtgtccctctta--taaataaacaaatgaact

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G31740.1 (Glycine max), 5'ss of exon 4
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcactgatatattttttatg-caacagaggttcaatacttgcatgcccac---tgcttcactcagttaat
   ||| || ||  | |||||    ||||| || ||| |||| || || ||||| ||  | ||||| |||||||||||||||||||| || |||||||| ||  ||| | || ||| |    |  |  | | ||     || || ||| || ||  || |   |||   | |||  | |   ||   || |       |||   
TCATTCTTCAGCACTTTTCTTTCAATACAATACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCAATCCAGAATAAAgtg-agttgcttcattttgcttttatagctttttgtttggaaatgtttgttgtggtaatatttgtttccttcttttaagtaaacaaatgatagttctggtt---

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G44090.1 (Glycine max), 5'ss of exon 3
-GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattat-ctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat-----
    ||| |||||  | || ||||  ||||| || |||||||| || || || ||  |  | ||||||||||||||||||||||| || || |||||||| ||      | ||  || | ||   |      ||||  | ||| ||      | ||  | |    ||  | |    ||  |     | ||     || | ||     
GTCATTCCTCGGCCCTTTTTTTCAA-TACAATACTGCATTGGGACCCCCTTACCGTATTTTAGTGGATACCAACTTCATCAATTTTTCCATCCAGAATAAAgtgagtgtgctttgttttgctttagggggtgtattggattgagat------tttgagagaatattttgacaaaaacaatcttgaagattttaaaagattatgtggg

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgt-ttagtcgtttaattatctg--ctgctctcctatt-tcactgatatattttttatgcaacagaggttcaatac--ttgcatgcccactg-cttcactcagttaat---------------------------------------------------------------------
 ||| | || | | | |||||     ||||| |    ||||  || || || |||||  | ||||||||||| |||||||| ||||| || |||||||||||  ||  |  | |||||  |   ||    |     | | || |  || |   | ||  |  | |  |  | |    |||  | |    || ||| | | | || ||                                                                     
TGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGGTTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGgtactacacaatcaattacattatctaaaatagagctgtaaccggaatgtgcatgataaagaaaatatcgattttggttgagttctttttgtcttgaataacttgattgaaatcttcttgtttattgtgcaaatgggtatcgttttttacttagtttcttctgttttatgttatag

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G46230.2 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgca-acagaggttcaatacttgcatgcccactgcttcactcagttaat-------------------------------------------------------
 ||| |  | | | | |||||    |||||| |  ||||||  || || || || ||  | |||||||| ||||||||||| ||||| || |||||||||||    || | |  | |  |||   |   ||||  ||  | |||| |    |||   |  ||  ||       |  ||   |  || |  ||    ||                                                          
TGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcatct--tcaattgc-atttctctatcacagagctataatcagaatgtgtatcgatctttgtagagtttatagtc-ttggtgaacctgattggaatctctcattgtttgaaatcctttttgacttattttgctctggtgtatctaatag

upper sequence: GRMZM2G016330_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCACCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgtttagtcgtttaattatctgctgctctcctatttcac-tgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaat---
 ||| |||| ||  | |||||||  |||||||| || |||||||| || ||||||||  | ||||||||||| ||||||||||| || || |||||||| |  |    ||||| |  | |  || |  | ||    || |||| |  |||   | | |   |  ||   |  |     |   | |   |   | | |  ||   
TGTTCCGTCCGCTCTTTTCTTCAAGTACAACACTGCTTTGGGGCCGCCTTATCGGGTTTTGGTGGATACCAATTTCATCAATTTTTCTATTCAGAATAAAg--tgagtgtttactgttgttttgttaacgtagggaacatgatcttgtttaggttctattcaatttttgttttcttgggtgtattaaat--atgaatatatctc