Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATCATTATATCTTGTCATGTCAACTGATCTTTTCTCCGACCGCGTCAAGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatag

Basic information

species Zea mays
transcript GRMZM2G016184_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016184_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 4
TGTATCATTATATCTTGTCATGTCAACTGATCTTTTCTCCGACCGCGTCAAGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactga-tatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatag
| |||||||||||||||||||||| || ||||||||||| || ||| | ||||| ||||| ||||||||  |||| || || ||||| | ||| || |||||||||| ||   || |||||  ||||      ||| | |    ||| |||| || | ||   ||  ||  || |  | |||||  |||||||||| |||||    ||| ||
TATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGgtactgaataacattcattatc-tacagtgaactttttct----tttttatgctggaattgttttaaattgtttaactgacatatttgtgtcctggctgtatg--ctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32832303|gb|CD971981.1|CD971981
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATC
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATC
EST: gi|211179443|gb|FL364371.1|FL364371
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|60400317|gb|DN233124.1|DN233124
EST:     CATTCCGTTATTTGGATAATATCCACCTTTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: CATTCCGTTA-TTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|211286255|gb|FL063748.1|FL063748
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|44681921|gb|CK786969.1|CK786969
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCAGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGCAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|76293603|gb|DV033171.1|DV033171
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|148947020|gb|EC892317.2|EC892317
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|76286797|gb|DV026365.1|DV026365
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|211200884|gb|FL351309.1|FL351309
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACT
EST: gi|148947019|gb|EC892316.2|EC892316
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|50322746|gb|CO517872.1|CO517872
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|50338098|gb|CO533224.1|CO533224
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|148953653|gb|EC899012.2|EC899012
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|67017667|gb|CO446416.1|CO446416
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: gi|76280960|gb|DV020528.1|DV020528
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT