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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag

Basic information

species Zea mays
transcript GRMZM2G015989_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 4
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatc-tagaggattttgctactttctccag
||| ||||| |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||||   | |||| || |   |||||     | | || | | | | | ||         |||    |   | | |||| |   ||||||| ||||
ATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGgtacac--caatataaaagcct-tgtatcttaat-tttacagcataaatattttacttggttctgggaacaatcgtggatctgtttactttc-ccag

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcg-tcactgttccggccatgtctcaatatctaga----ggattttgctactttctccag
 |||||  | ||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| || ||||| ||  | ||| | || || || |||||| |      | |      |   | | ||  || |  |||    | |||  || |     |  |   ||  |||        || || || ||| | |||
GTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGGTTGTTCTAGCTCAGGGTCTTATTGCCGAAGGCGTTAAGgtaaaattatttgttgtgttttcggaaatgtagtgttcatactaataactactcggttttggattttgtaattaggcctcattttatgttaatttttgcag

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcat--gtattggggtatc-tatatcgtcactgttccggccatgtctc----aatatctagagg----atttt--gctactttctccag
 |||||  | ||||| ||||| || ||||| ||||||||||||||||| || || || |||||||| |||||||| ||  | ||  | || ||||| ||||||   | |  | | |   || ||  | | |   || || ||  |  | |||  |  ||   ||| |     |||      |||    |||||  | || |||   |||
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtag--gattatttgttgtcttattggaaatttagtgtcataactaataactactt-ggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttcc--ggccatgtctcaatatctagaggattttgctactttctccag
  | ||  | ||||||||| | || || |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||  | ||| |||| |||||||||||      || | |||   ||  | | ||| |   |  | |    || ||||    |    |||    ||||   | |||||    |   |       
GCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGCTCAAGGTCTTATTGCTGAAGGTGTAAAGgtttg---taatttattgtctt-tcttttgtgaatttgaaacaaccagtgttttttgttgttgttgtgatatgatgtggattgaattgtgtag-----

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag
  | ||  | ||||| ||||| || || ||||||||||||||||| || ||||| || || ||||| ||||| |||||  | ||| |||||||||| |||||           | | || |  |   ||  | | ||| |    | |   |       |      | ||    ||  ||||||    ||||     
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgt-----------tgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaa-attttgtatttttcag---

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag
  | ||  | ||||| ||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||||| |||||  | ||  |||||||||| |||||         | | |||| |  |   ||  | | ||| ||| || |   |||      | |   | ||  |  | |||| |  || |        
GCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATCGCTGAGGGTGTCAAGgt--------ctgtgtaacattcttctttcagctttctctat-gtgaaacttcaaaaacttttgtactaattttaagattatcttattcag-----

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtat-ataacct-catgtattggggtatctatat---cgtcactgttccggcc-atgtct-caatatctagaggattttgctactttctccag
 |||||  | ||||||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||||  |||||||||| ||||| |||||        || |  | || | | | | ||  || |   | ||   ||| | || |  |||| |||  |  ||||  || | |    || | | |||     
GTTGGTGAGACAAGCTGCTTCAAAAACCAATGATTTGGCTGGTGATGGGACAACTACTTCTGTTGTTCTGGCTCAAGGCTTGATTACTGAAGGTGTTAAGgtttgtaaaggttttgtcacttgcttttctttaggaacacaaattagcgtgaatgcttgggccgatgcttgtaatacttacatggcactgattcgttcag---

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattg-gggtatctatatcgtcactgttccggcca----------tgtctcaatatctagaggattttgctactttctccag
||| ||  | ||||| ||||| || || || ||||||||||| ||||||||||| || || ||||| ||||| |||||| | ||| |||| ||||| |||||      | |  || |  ||  ||| | |     ||  | | | |     |    |  |          ||| |   |  |||    |  |   |  ||  | |||
ATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTGTTGTTCTTGCACAAGGGCTTATTGCTGAAGGTGTCAAGgtctgtttttgctta-actcttttgtttggtaaacatgaagaacatagtaatctaaggaaatgataacactgtgtttgttgctaactaagatcattcattcattcag

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgta---------cacgctagtatataacctcat----gtattggggtatctatatcgtcactgttccggccatgtctcaat-atctagaggattttgct-actttctccag----------------------------------
 |||||  | |||||| |||| || || || || |||||||||||||| || ||||| || || || |||||||||||| | ||| | |||||||| ||||||         | |||  | || |   || |     ||||| | |    |  |  || |||  || |    | || || |    | ||  |||  ||| | | | |  ||                                  
GTTGGTTAGGCAAGCTTCTGCCAAGACCAACGATTTGGCTGGTGATGGTACCACCACCTCTGTGGTTCTTGCTCAAGGGCTCATTGCCGAGGGTGTCAAGgtagcttcatcacccgcctgaatgtcttcttaatgtagtatttgcgatctttcaaagttactcctcagttgttatcgcactcgaatcgaatattcggctcaatctatgaagttgagctaatctggtcaactttcttcacacgtag

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ36935 (Selaginella moellendorffii), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag
  | ||  | ||||||||  | |||||||||||||||||||||||||| || ||||| || || ||  | || |||||  | || |  |||||||| |||||    | |  |    ||  |||||    |  || ||   |  | || | |   ||  |  |  ||                              
GCTTGTAAGACAAGCTGCGTCAAAAACAAATGACTTGGCTGGTGATGGAACCACCACGTCCGTGGTTTTGGCACAAGGACTTATAAACGAGGGTGTCAAGgttt--gttttttctcaagttcatg----gaagtttcatga--ggcaatctggagggtaatttgcag-----------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ33580 (Selaginella moellendorffii), 5'ss of exon 3
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag
  | ||  | ||||||||  | |||||||||||||||||||||||||| || ||||| || || ||  | || |||||  | || |  |||||||| |||||    | |  |    ||  |||     |||  | |  ||   | || |||   |   |  |  ||                              
GCTTGTAAGACAAGCTGCGTCGAAAACAAATGACTTGGCTGGTGATGGAACCACCACGTCCGTGGTTTTGGCACAAGGACTTATAAACGAGGGTGTCAAGgttt--gatttttctcaagttca-----tggaattttcatga-ggcaatgtggagagtaatttgcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22473201|gb|BU037681.1|BU037681
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32841380|gb|CD981061.1|CD981061
EST:     CAACCACTTCGGTTGTACTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840179|gb|CD979860.1|CD979860
EST:     CA-CCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAA-G                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211453373|gb|FL117934.1|FL117934
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|29167881|gb|CB411141.1|CB411141
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|28568974|gb|CB280849.1|CB280849
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840608|gb|CD980289.1|CD980289
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GGTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|67040018|gb|CO466273.1|CO466273
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211451229|gb|FL117917.1|FL117917
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840617|gb|CD980298.1|CD980298
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211455503|gb|FL117949.1|FL117949
EST:     ACCCACTTCGNT-GTCCTTGCTCAAGGGATGAATACTGAGGGTGTAAAAG                         GT-GTAGCTGCTGGTGCTAATC-AGTGCAGATCACCCGTGGTATTGAGAA
genomic: ACC-ACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAA-Ggtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAA
EST: gi|31355200|gb|CD439557.1|CD439557
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211455504|gb|FL117950.1|FL117950
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCAACCGTGG
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGG
EST: gi|211453368|gb|FL117929.1|FL117929
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|67016492|gb|CO445241.1|CO445241
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211455496|gb|FL117942.1|FL117942
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGG
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGG
EST: gi|47961558|gb|CN844267.1|CN844267
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCANATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211451956|gb|FL157392.1|FL157392
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840620|gb|CD980301.1|CD980301
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32934116|gb|CF038928.1|CF038928
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840152|gb|CD979833.1|CD979833
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GT-GTAGCTGTTGGTGCTA-TCCAGTGCAGATC
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATC
EST: gi|211455505|gb|FL117951.1|FL117951
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGG-ATGATTACTGAGGGTGTAAAG                         -TTGTANCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840586|gb|CD980267.1|CD980267
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|32840180|gb|CD979861.1|CD979861
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|211453376|gb|FL117937.1|FL117937
EST:     ACCACNTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: ACCAC-TTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGG-TGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
EST: gi|87155572|gb|DY400361.1|DY400361
EST:     CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAG                         GTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA
genomic: CAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 475

ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAAACAGCCAAAGCACTAGTCAGTGAACTCCAAAAGATGTCCAAGGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 247

ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAAACAGCCAAAGCACTAGTCAGTGAACTCCAAAAGATGTCCAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 441

ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAAACAGCCAAAGCACTAGTCAGTGAACTCCAAAAGATGTCCAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 592

ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgcta ... ctttctccagGTTGTAGCTGCTGGTGCTAATCCAGTGCAGATCACCCGTGGTATTGAGAAAACAGCCAAAGCACTAGTCAGTGAACTCCAAAAGATGTCCAAGGAG