Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaacttctagagctcattctttttccaacatattgagataaaaatgaagtgaatagctttttctcttatgaagaaacatgcatttgctgactgcaatagttctgctaaaccttcctgttgcccttccgtgcag

Basic information

species Zea mays
transcript GRMZM2G015642_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015642_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 3
CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaacttct-agagctcattctttttccaacatattgagataaaaatgaagtgaatagctttttctcttatgaagaaacatgcatttgctgactgcaatagttctgctaaaccttcctgtt-gcccttccgtgcag
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||  |||||||| ||||| ||||| ||||  || |||||| || ||||||| ||||   | | ||||   ||||| |||| || ||| ||||  ||| |   | | || ||||  |||| |||||||||||||||| ||||| |  || |  |  ||| |||| || || | |     
CTTCGGGATGGATCAACACATCAAGGAACTGTGACTTCAATGGAACAAAACAACGATACTTTCGTGCTTCATTCTGAGCTGGAGAGGgtaaggcaacttcttagagacaaatatttta--aacatcttgatatgaaa-tgaaaggaaga--ctatcctgttatatagaaccatgcatttgctgactacaata-tattgatgcatgttcttgttcgctctgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32843365|gb|CD983046.1|CD983046
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71308849|gb|DR790674.1|DR790674
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|74245854|gb|DT653768.1|DT653768
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|211350390|gb|FL140681.1|FL140681
EST:     CA-TGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAG-                         AAAGGCAAAGTAAA
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAA
EST: gi|71428602|gb|DR809652.1|DR809652
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|89252836|gb|DY624622.1|DY624622
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|78108643|gb|DV527061.1|DV527061
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAAG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71764914|gb|DR962851.1|DR962851
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|32843363|gb|CD983044.1|CD983044
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|33099325|gb|CF059285.1|CF059285
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|149082784|gb|EE172006.2|EE172006
EST:     AATGGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAGGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: AAT-GGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|76015966|gb|DT943136.1|DT943136
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71312732|gb|DR792898.1|DR792898
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71428601|gb|DR809651.1|DR809651
EST:     TTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: TTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|32864563|gb|CF004245.1|CF004245
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|76911904|gb|DV164485.1|DV164485
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|211371450|gb|FL285907.1|FL285907
EST:     TGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: TGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|91054430|gb|EB164848.1|EB164848
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGCCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|50331665|gb|CO526791.1|CO526791
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|94476999|gb|EB705957.1|EB705957
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|76013858|gb|DT941028.1|DT941028
EST:     AATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: AATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|74245853|gb|DT653767.1|DT653767
EST:     AAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: AAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|91054431|gb|EB164849.1|EB164849
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|31354626|gb|CD438983.1|CD438983
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|32843520|gb|CD983201.1|CD983201
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71757403|gb|DR955340.1|DR955340
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|33099323|gb|CF059283.1|CF059283
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71313717|gb|DR793448.1|DR793448
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|74245303|gb|DT653217.1|DT653217
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|78076004|gb|DV504438.1|DV504438
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|211352793|gb|FL140687.1|FL140687
EST:     CAATGGAAGAAAACAGTGATACTTTTGKGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGKGCATATTGGTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|149082785|gb|EE172007.2|EE172007
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|78111329|gb|DV529726.1|DV529726
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|31355278|gb|CD439635.1|CD439635
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71312730|gb|DR792897.1|DR792897
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|31361274|gb|CD445631.1|CD445631
EST:     CAATGGAAGAAAACAGAGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCACAGTAAAACCTGTGCATATTGCCGATGTTCCTGGTCATGCTA
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTA
EST: gi|101399753|gb|EB821723.1|EB821723
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|60354603|gb|DN221576.1|DN221576
EST:     CATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|76287924|gb|DV027492.1|DV027492
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|32913988|gb|CF018800.1|CF018800
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACC
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACC
EST: gi|32843254|gb|CD982935.1|CD982935
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCCGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|71437117|gb|DR818167.1|DR818167
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|101381890|gb|EB813002.1|EB813002
EST:     TCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: TCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|211350394|gb|FL140685.1|FL140685
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAA
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAA
EST: gi|71313715|gb|DR793447.1|DR793447
EST:     AACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: AACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
EST: gi|32843310|gb|CD982991.1|CD982991
EST:     CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG                         AAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 46 (downstream exon)
Score: 120

CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 118

CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 92

CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 111

CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaac ... ttccgtgcagAAAGGCAAAGTAAAACCTGTGCATATTGTTGATGTTCCTGGTCATGCTAGGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGGGACGGATCATCACATCAAGGAACTGTGACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatggaaacttctagagctcattctttttccaacatattgagataaaaatgaagtgaatagctttttctcttatgaagaaacatgcatttgctgactgcaatagttctgctaaaccttcctgttgcccttccgtgcag

- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA