1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTGAGGAAAGTGCTGCTGATTTCCTGATTAATAAGGTCTCTGAGTTTCCAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcaggatcataggactaaacctatttatcgtgctgtttatgctgtgctatatgttataagtcagtgtctctgttctttgcttag
species | Zea mays |
transcript | GRMZM2G015344_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|71318567|gb|DR796043.1|DR796043
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|71449461|gb|DR830511.1|DR830511
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|76935894|gb|DV174515.1|DV174515
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|71438819|gb|DR819869.1|DR819869
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|78105410|gb|DV523828.1|DV523828
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|94473161|gb|EB702119.1|EB702119
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|149077634|gb|EE166336.2|EE166336
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTEST: gi|76290576|gb|DV030144.1|DV030144
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTT
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|71439185|gb|DR820235.1|DR820235
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTG GCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTAEST: gi|211057431|gb|FL062179.1|FL062179
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCTTCCTTTGCAAGCAAGGTTAAGAAAATAGTTGTA
EST: CAGGAGAAGTCTCTGTGCTTGCGTTGGGACCC-TGACAA-TGTAGCATTG GC-ATCAAAAGAGCCCCT
genomic: CAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcag ... ctttgcttagGCCATCAAAAGAGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGAGGAAAGTGCTGCTGATTTCCTGATTAATAAGGTCTCTGAGTTTCCAGGAGAGGTCTCTGTGCTTGCGTTGGGACCCCTGACAAATGTAGCATTGgtatgttcaggatcataggactaaacctatttatcgtgctgtttatgctgtgctatatgttataagtcagtgtctctgttctttgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG