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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaaacatttcttcagaaatcagatggttattgacttattgagtcataaattgttcctgtgacgtatactggaattaagacttacagcaagttatgtggtgatgacag

Basic information

species Zea mays
transcript GRMZM2G015324_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015324_T06 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 5'ss of exon 6
GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaaacatttcttcagaaatcagatggttattgacttattgagtcataaattgttcctgtgacgtatactggaattaagacttacagcaagttatgtggt-gatgacag
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GTAAAACAGATGTTGATTGCTCTTCTAGGTGAATCAGAAATGAGATTATCTGATGAGATTATTGAGACAATCCTTGACAAGgtt----tggacatttgattaaaaa---aatg---------tagttaaaatgtacgtaattctggtgtcttatgacagagttaagacttacaatgacttatgtggttaatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211383652|gb|FL455014.1|FL455014
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|71324358|gb|DR798880.1|DR798880
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|18174492|gb|BM349880.1|BM349880
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|211310556|gb|FL467517.1|FL467517
EST:     ATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: ATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|78116066|gb|DV534454.1|DV534454
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|113703680|gb|EE681184.1|EE681184
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|28985958|gb|CB350899.1|CB350899
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|17931916|gb|BM268876.1|BM268876
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|87155086|gb|DY399875.1|DY399875
EST:     AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: gi|6227264|gb|AW155863.1|AW155863
EST:     TGAGACAATCCTGGATAAG                         ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: TGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG