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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttcttatccttttatttcatttcattgtgatttgttttatctcatctttctaaaaagttcgaactacctgacag

Basic information

species Zea mays
transcript GRMZM2G015324_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015324_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 5'ss of exon 4
CTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttcttatccttttatttcatttcattgtgatttgttttatctcatc-tttctaaaaagttcgaactacctgacag
||||| ||||| ||||||||||| | ||| || |||||||||||||| |||||| ||||||| ||||||||||| ||||||||||| || ||||||||||||| ||| ||  | || | ||| || |||   |  ||  |   ||    ||  |||  ||| | | || |     |||||
CTTTTTGATGTGAAGAAAAGGGGGGTCATCGACTTTGGTGACTTTGTTCGAGCTTTAAATGTATTTCATCCAAACATCCCAATGGAAGAGAAAATTGATTgtaagttattgccattctgttttatctcaacttcgttgataccataatttcacttcctaaatgattgaccccttggacag

upper sequence: GRMZM2G015324_T05 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
CTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggtt--cttatcctttta---tttcatttcattgt----------gatttgttttatctcatctttctaa--aaagttcgaactacctgacag-----------------
||||| ||||| |||   | ||| | |||||||||||||||||||||| |  | |||||||| || |||||||||  ||||   || || ||||||||||||| |||  |||  | |||||   || | ||  ||||           |   |||| | |   ||  |||| |  | | ||  |   | ||   |                  
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag

upper sequence: GRMZM2G015324_T05 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0236g00140.t01 (Vitis vinifera), 5'ss of exon 5
CTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggtt--cttatcctttta---tttcatttcattgt----------gatttgttttatctcatctttctaa--aaagttcgaactacctgacag-----------------
||||| ||||| |||   | ||| | |||||||||||||||||||||| |  | |||||||| || |||||||||  ||||   || || ||||||||||||| |||  |||  | |||||   || | ||  ||||           |   |||| | |   ||  |||| |  | | ||  |   | ||   |                  
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76286894|gb|DV026462.1|DV026462
EST:     AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: gi|9953024|gb|BE639607.1|BE639607
EST:     AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: gi|12968888|gb|BG265729.1|BG265729
EST:     AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: gi|6102042|gb|AW126512.1|AW126512
EST:     AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: gi|67024253|gb|CO453002.1|CO453002
EST:     AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: gi|87155086|gb|DY399875.1|DY399875
EST:     ATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT                         TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: ATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG