1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCGGCGCAGGCAGGGTCGCTGCTGCTGGCAGGGCCGTTCGTTGACTACCTGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTGgtaccgtacgagtcgacgaacaagaattctggaatccgaatgccatccctcacctcacctcacctcaccgttttctgccgcag
species | Zea mays |
transcript | GRMZM2G014610_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCGTCTCTCGCTCTG TTGTTCCTCGCGCTGTCGTGCTTTCATCGCGATCGGGGTCAACYTGAGCCAEST: gi|148971019|gb|EE021852.2|EE021852
genomic: TCTCGTCTCTCGCTCTGgtaccgtacg ... tctgccgcagTTGTTCCTCGCGCTGTCGTGC-TTCATCGCGATCGGGGTCAACCTGAGCCA
EST: TGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTG TTGTTCCTCGCGCTGTCGTGCTTCATCGCGATCGGGGTCAACCTGAGCCAGEST: gi|110210926|gb|EC892823.1|EC892823
genomic: TGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTGgtaccgtacg ... tctgccgcagTTGTTCCTCGCGCTGTCGTGCTTCATCGCGATCGGGGTCAACCTGAGCCAG
EST: TGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTG TTGTTCCTCGCGCTGTCGTGCTTCATCGCGATCGGGGTCAACCTGAGCCAG
genomic: TGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTGgtaccgtacg ... tctgccgcagTTGTTCCTCGCGCTGTCGTGCTTCATCGCGATCGGGGTCAACCTGAGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGCGCAGGCAGGGTCGCTGCTGCTGGCAGGGCCGTTCGTTGACTACCTGCTGACAGGGCAAAGGGTGGACCACTTCAGCTTCTCGTCTCTCGCTCTGgtaccgtacgagtcgacgaacaagaattctggaatccgaatgccatccctcacctcacctcacctcaccgttttctgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT