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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGATCTGTGGGTTTCAACGCTGTGTATGTGCCATTTTTGGTGGATGACTTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAGgtagttaattttttggagagccaaatcgtatgttggaatgatgtttgttttagccaaatcatatgcctcatatctgatcagacctttttttttctttccatccaataaactggcccacag

Basic information

species Zea mays
transcript GRMZM2G014376_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626287|gb|AW257819.1|AW257819
EST:     TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAG                         TTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA
genomic: TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAGgtagttaatt ... tggcccacagTTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA
EST: gi|78091464|gb|DV519838.1|DV519838
EST:     TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAG                         TTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA
genomic: TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAGgtagttaatt ... tggcccacagTTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA
EST: gi|32929488|gb|CF034300.1|CF034300
EST:     TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAG                         TTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA
genomic: TTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGCTTCAGgtagttaatt ... tggcccacagTTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGA