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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcatatttgcttaatatgtatatgatttgagaaacctgatcttttcacatggcagatacacagtttaattctcatattaattttgttagaatag...

Basic information

species Zea mays
transcript GRMZM2G014313_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 5'ss of exon 4
ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcatatttgcttaatatgtatatgatttgagaaacctgatcttttcacatggcagatacacagtttaattctcatattaattttgttagaatag---------
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||  |        |||   |||||   | | | |  ||||| |||| | | ||| |   | ||   ||  ||  | || |||||  || |  || |          
ACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGgtatgcac-------tttatagtgtatgctact-gtggtacctgttcttctgatatgccgattccatgtttatatatttat-ttaatgctgcttcaaaatcatcagtgt

upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 2
-ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgta--tgttcatatttgcttaatatgtatatgatttgagaaacctgatcttttcacatg-gcagatacacagtttaattctcatattaattttgttagaatag
 || ||||| ||||| |||||||||||||||||||| || || || |||||||  | || |||  | |||      ||| || ||         ||||      |  || |   || |||| | |      | | |   |||   ||  ||  
GACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAggtaattttttataactactt--cccctatttgtttcttactggttgattggaatatttgtgtgaattcacattcttcaaaacttctctgtttatatatcat--

upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 5
ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgta--tgttcatatttgcttaatatgtatatgatttgagaaacctgatcttttcacatggcagatacacagtttaattctcatattaattttgttagaatag
|| ||||| ||||| |||||||||||||||||||| || || || |||||||  | || ||| || |   || ||| | | | ||||      |  | ||||    ||  |   |||   |||||    | | ||  || | |    | | 
ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaattttttatacttcccctatttgtttcttacttgattggaatattattttagtgtga-atccacaatctttaaaatgcct-ttgtttatatatatacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211291996|gb|FL370573.1|FL370573
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAA-TCCCCTTTCCATTGACTCAGAG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAG
EST: gi|12970851|gb|BG267190.1|BG267190
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211064386|gb|FL218050.1|FL218050
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAA-TCCCCTTTCC
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCC
EST: gi|15053265|gb|BI358810.1|BI358810
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|60338600|gb|DN205573.1|DN205573
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|86468606|gb|DY234976.1|DY234976
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211069863|gb|FL218071.1|FL218071
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211150578|gb|FL418267.1|FL418267
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|60401153|gb|DN233960.1|DN233960
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|71443118|gb|DR824168.1|DR824168
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|71324326|gb|DR798864.1|DR798864
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|37399865|gb|CF637274.1|CF637274
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         C-AAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|78121870|gb|DV540254.1|DV540254
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|45847449|gb|CN071392.1|CN071392
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|31356975|gb|CD441332.1|CD441332
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211498980|gb|FL377920.1|FL377920
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTT
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTT
EST: gi|211291993|gb|FL370570.1|FL370570
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTTCATTGACTCAGAGA
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGA
EST: gi|211497850|gb|FL218033.1|FL218033
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCCTTTC
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCC-TTTC
EST: gi|50337385|gb|CO532511.1|CO532511
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211067129|gb|FL218060.1|FL218060
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAG
EST: gi|211069861|gb|FL218069.1|FL218069
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|32936209|gb|CF041021.1|CF041021
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|94477440|gb|EB706398.1|EB706398
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211011987|gb|FL416045.1|FL416045
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAA-TCCCCTTTTCATTGACTCAGAGATTCA
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCA
EST: gi|71446698|gb|DR827748.1|DR827748
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|91055764|gb|EB166182.1|EB166182
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|14717593|gb|BI245243.1|BI245243
EST:     GTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: GTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|15545720|gb|BI643514.1|BI643514
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211482792|gb|FL423815.1|FL423815
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACT
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACT
EST: gi|78025548|gb|DV493935.1|DV493935
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211212163|gb|FL396523.1|FL396523
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|16917576|gb|BM073349.1|BM073349
EST:     CTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: CTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211434223|gb|FL403309.1|FL403309
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|60398183|gb|DN230999.1|DN230999
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211064385|gb|FL218049.1|FL218049
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|148954192|gb|EC899598.2|EC899598
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|31356132|gb|CD440489.1|CD440489
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211064387|gb|FL218051.1|FL218051
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|32851266|gb|CD990947.1|CD990947
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|15590500|gb|BI675116.1|BI675116
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|14202406|gb|BG836083.1|BG836083
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|67020108|gb|CO448857.1|CO448857
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|32864289|gb|CF003971.1|CF003971
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|94473567|gb|EB702525.1|EB702525
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|31356090|gb|CD440447.1|CD440447
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|78090530|gb|DV518904.1|DV518904
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|60350629|gb|DN217602.1|DN217602
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|15590499|gb|BI675115.1|BI675115
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|50337384|gb|CO532510.1|CO532510
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|71324327|gb|DR798865.1|DR798865
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|91875885|gb|EB405842.1|EB405842
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|71439477|gb|DR820527.1|DR820527
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|4886165|gb|AI677285.1|AI677285
EST:     ACNCTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211010153|gb|FL113900.1|FL113900
EST:     TTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: TTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211010150|gb|FL113897.1|FL113897
EST:     TTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: TTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|60356673|gb|DN223646.1|DN223646
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211069864|gb|FL218072.1|FL218072
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|211063347|gb|FL405204.1|FL405204
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|31356942|gb|CD441299.1|CD441299
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
EST: gi|32937025|gb|CF041844.1|CF041844
EST:     ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG                         CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG
genomic: ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 307

ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATGGGATTGACCTGAGCACTGTTGATGTCAGCTATGTTAGTAGCCGGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 318

ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATGGGATTGACCTGAGCACTGTTGATGTCAGCTATGTTAGTAGCCGGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 389

ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATGGGATTGACCTGAGCACTGTTGATGTCAGCTATGTTAGTAGCCGGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 336

ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGgtatgttcat ... atcttttcagCAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATGGGATTGACCTGAGCACTGTTGATGTCAGCTATGTTAGTAGCCGGTCATG