1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGGATGGAACTTATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaactgagtggtttctaacattattcttaatatatttttgttagtttattatatgtcatgacaactatctagctatcccattctgaagtcttcctttcttttccaaatag
species | Zea mays |
transcript | GRMZM2G013625_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTC---A- TGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCAEST: gi|91053085|gb|EB163503.1|EB163503
genomic: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaact ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
EST: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA-T-- -GTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCAEST: gi|78115431|gb|DV533819.1|DV533819
genomic: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaact ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
EST: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA-T-- -GTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCAEST: gi|71767635|gb|DR965572.1|DR965572
genomic: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaact ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
EST: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTAT TGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
genomic: TGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaact ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGATGGAACTTATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAGTATgtcagtaactgagtggtttctaacattattcttaatatatttttgttagtttattatatgtcatgacaactatctagctatcccattctgaagtcttcctttcttttccaaatag
- - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AAGGAA