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AGTCTTCTTTGCAGTAACAAAGTTATTCCAGTCTAGTGATGCTGGTCTTAGGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaatgatgttttcagatgaatacaatgtttttgatgccttctaatctaattaaaagatggttgagctttatgattgtaatag
species | Zea mays |
transcript | GRMZM2G012501_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGGTTAGTGTACTTAATGATGAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCCATTGATGAAGGACATGAATTAG-AGGACAGEST: gi|148973647|gb|EE024760.2|EE024760
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTC-ATTGATGAAGGACATGAAT-AGCAAGACAG
EST: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGATEST: gi|76917670|gb|DV166948.1|DV166948
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
EST: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGATEST: gi|67016076|gb|CO444825.1|CO444825
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
EST: CGTCAGTTGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAACAGCAAGACAGATEST: gi|148970762|gb|EE021504.2|EE021504
genomic: CGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
EST: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGATEST: gi|148967121|gb|EE018293.2|EE018293
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
EST: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGATEST: gi|148946070|gb|EC891366.2|EC891366
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
EST: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAG GTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
genomic: GGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaa ... attgtaatagGTCATCATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTTCTTTGCAGTAACAAAGTTATTCCAGTCTAGTGATGCTGGTCTTAGGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGgttaaataaatgatgttttcagatgaatacaatgtttttgatgccttctaatctaattaaaagatggttgagctttatgattgtaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG