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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTATGCTACAGCAAAACGCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgcttaacttagagatatgttcactcacccccccttttttatttgttctcatgccatgctgacaatcttag

Basic information

species Zea mays
transcript GRMZM2G011588_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011588_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g47740.2 (Oryza sativa), 5'ss of exon 4
ATGGTATGCTACAGCAAAACGCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgcttaacttagagatatgttcactcacccccccttttttatttgttctcatgccatgctg--acaatcttag
||||| || |||||||||| ||||||||||||||||| ||||| || ||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||||   |    |||   || |   || |||| |  ||     ||| ||  ||||| ||||| |||  ||   |  ||||||
ATGGTTTGTTACAGCAAAATGCTTGGAGGCCACAGAGGGGACTGCCCGAAAACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgactttcttta---tacactcattttcatttgcctgttttttctt--ttgttgtcatgacattttgttgctttcttag

upper sequence: GRMZM2G011588_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G75410.2 (Arabidopsis thaliana), 5'ss of exon 2
ATGGTATGCTACAGCAAAAC--GCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgcttaacttagagatatgttcactcacccccccttttttatttgttctcatgccatgctgacaatcttag
      ||  |  |  | ||  |||||||| ||||| |||||  |||||||||| || ||||| || || || |||||||| ||||| ||||||||||| |||||||||| |  | ||   | ||| |  |  |  ||   || |  |  || |||  |   |||  ||  |      |  |||
--AACTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGAGGCTTACCTGAAAACTCTGTCTCTATACTTCGAGCTTGGCTCTTTGAGCATTTCCTTCATCCgtaagtttgtt-gtttg--taagacactttctttctgctcctcattgcttcattgataaccatttcaatc--gtttttgtag

upper sequence: GRMZM2G011588_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G19700.3 (Arabidopsis thaliana), 5'ss of exon 3
---ATGGTATGCTACAGCAAAACGCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgctt----aacttagagat-atgttcactcacccccccttttt----tatttgttctcatgccatgctgacaatcttag--------------
    ||| ||| | |  |     |||||||| || || ||||| || |||||||| || |||||  |||| || |||||||| ||||||||||||||||| |||||||| ||||  ||     || | | |  | |   ||  |||  | |||  |       ||||      |  | ||| |     |||                 
AGCTTGGAATGGTTCGACC---TGCTTGGAGACCTCAAAGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCATCCgtaagtgtttcttctctcacaagtcacaagtcacaatctttcaatctcccagtacaaaacatttagagagactctatgtttttcttctgttttttttatttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211185591|gb|FL318526.1|FL318526
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|211335472|gb|FL342536.1|FL342536
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|211093605|gb|FL328986.1|FL328986
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|91872093|gb|EB402050.1|EB402050
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|211016399|gb|FL363405.1|FL363405
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|6626604|gb|AW258136.1|AW258136
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
EST: gi|91049857|gb|EB160275.1|EB160275
EST:     AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCC                         GTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC
genomic: AATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagttttt ... acaatcttagGTATCCAAAAGATTCTGAAAAGCTAATGTTATCGAGACAAACTGGGTTGAC