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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagttccttttgctaattggtgcctttgtgcactgagcttctatgtaatatctactctaacttgttttgaaattttaaatctctttcag

Basic information

species Zea mays
transcript GRMZM2G011518_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011518_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 4
ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttg--------------tagttccttttgc--taattggtgcct--ttgtgcactgagcttctatgtaatatctactctaacttgttttgaaattttaaatctctttcag
|| ||||| |||||||| |||||||||||||| || ||||||||||| || || ||||||||||               || ||  || ||    |    |||  |  || ||||||||  ||   ||   | | | |||||||||  | ||   |  |   | ||||||||
ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGgtttacatatatgtataaataatttattatgaggcagcaagtgtttgcttctgcactgacatttgttgccttgt-tgctctaacttactgtgtggtaatc--tgtctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535182|gb|FL238609.1|FL238609
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGT
EST: gi|21330796|gb|BQ486177.1|BQ486177
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|60399000|gb|DN231816.1|DN231816
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|211532193|gb|FL238605.1|FL238605
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGAACCTTTTATGCTTAACAGTGTGTT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTT
EST: gi|211532190|gb|FL238602.1|FL238602
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCT
EST: gi|211535183|gb|FL238610.1|FL238610
EST:     TGATTCACTGGATAGAGAGAGAATCGGGGAGAGCCAGGGCGTAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTG
genomic: TGATTCACTGGATAGAGAGAGAATCGGG-AGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTG
EST: gi|76016402|gb|DT943572.1|DT943572
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTAACAGTGTGTTATTGGTGTTTGCT
EST: gi|32802499|gb|CD954735.1|CD954735
EST:     TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG                         GCTATAATCAATGACCCTTTTATGCTTA
genomic: TTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAGgtttgtagtt ... tctctttcagGCTATAATCAATGACCCTTTTATGCTTA