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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGTATTTAAGAGTTTTCAACTGGCCTACCATGGGGTCTGTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatggccattgaactctctctttccacttgattattggttgtgagatactgatgggttcctctgctttgatccatcttctcag

Basic information

species Zea mays
transcript GRMZM2G011364_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014922|gb|EE044651.2|EE044651
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|149096646|gb|EE182411.2|EE182411
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATA
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATA
EST: gi|78081364|gb|DV509776.1|DV509776
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|149070573|gb|EE158979.2|EE158979
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAAT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAAT
EST: gi|74244209|gb|DT652123.1|DT652123
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|93284045|gb|EB676309.1|EB676309
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|76929908|gb|DV172213.1|DV172213
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|32945451|gb|CF050270.1|CF050270
EST:     GATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|148965898|gb|EE016799.2|EE016799
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGT
EST: gi|32827142|gb|CD966820.1|CD966820
EST:     GATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
EST: gi|78083929|gb|DV512322.1|DV512322
EST:     GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAG                         TTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT
genomic: GTTCTCACAGAAATCGATACTAAAACATCGATTAAGGATCTTACTATCAGgtaacaaatg ... atcttctcagTTCCGACGAGAAGTTTCTTGCTGTGAATAGGAGCAGTGGCCCATGTAGAGT