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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttttttttacagaaaaattaaaatagacttagtaacttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcag

Basic information

species Zea mays
transcript GRMZM2G011136_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011136_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttttttttacagaaaaattaaaatagacttagtaac-ttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcag
|||||||||||||||||||||| |||| |||||||||| |||| |||| ||||||||||||||| |  | || ||||| || |||||||||||  ||||||| ||    | |      |     || ||  |      ||||| || ||||        || |  || ||   | ||| |  | ||||| || ||
GGAAAAGAGCAACTTCAAGTTGTTATCTGATGAAGAGTATGATGTTGCACAATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAGgtctggaactat------ggccttttcaagcatgtactgtaacgtttcatg--------ttcg--gatgactgaattgatttcgttgaattgtag

upper sequence: GRMZM2G011136_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttttttttacagaaaaattaaaatagacttagtaacttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcag
||| ||||||||||| ||  |   |    |||||||| | ||  |||| || |||||  | ||| |  | |||||||| |||||||||||||| |||||||||||       |||| | |||  || |   |  |||      |  |  || |  |||       |   | |  |||||     || | || ||
GGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGgtttg-------tttaaacaaactttcactaatgcttgtgtgttgccgggattcttata----aaatagttttcttgcttttggtgga-tgaag

upper sequence: GRMZM2G011136_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0068g00980.t01 (Vitis vinifera), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttttttttacagaaaaattaaaatagacttag-taacttacatgactagtattttgttgacg-atctatttgctaaccttgaaatgcag---------------------------------------------------
||| || |||||||||| | |   | ||||||| ||| |||| ||||| |  |||||  |||||    |||||||||| ||||  ||||||||||||||||| |||||| | |  | | ||  ||  | | | ||| |  | |  ||||||  |       | |  ||  ||  | ||       | || ||                                                       
GGATAAAAGCAACTTCAGGCTAACAACAGATGATGAGGTTGAGATTGCACTTTCTGGGCAATATCGTCTGAATCTTCCTATCATTGTTGATGAATCTAAGgtatgatttatctgaata-aagtatagatacacactgaaattagatacatgcatgtatgcctataaacacattcacttttgtctttagagatttcatttgtgttttacatctgctgatcttagtgttcacttttttcctgaatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454006|gb|FL153959.1|FL153959
EST:     AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG                         CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: gi|211454007|gb|FL153960.1|FL153960
EST:     AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG                         CTAGACGAGAAGTTGTTGACAA
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAA
EST: gi|76916271|gb|DV166314.1|DV166314
EST:     AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG                         CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: gi|13559022|gb|BG550377.1|BG550377
EST:     AATCTGGAAAATATTCGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG                         CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT