Sequence
atgc intronic sequence ATGC exonic sequenceAATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttcctatgcttgtttgctctatacttactgttagcagtcttgactgcgccatgcaggcagtccctacaggctggcgccatctctgtccctatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttcctatgcttgtttgctctatacttactgttagcagtcttgactgcgccatgcaggcagtccctacaggctggcgccatctctgtccctatc
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AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgtttgcttagcttttcctggttgtgctatacttac----aatgtcactggacactcgttcttagtagccttcttgttccag-------------------
upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G35140.1 (Glycine max), 5'ss of exon 24
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttccta---tgcttgtttgctctatactta--ctgttagcagtcttgactgcgccatgcaggcagtccctacaggctggcgccatctctgtccctatc
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GATCATGAAGGAGCATAAGAATCCCAAGGTTCTTAGTGAGGGAATTTTGTGGATGGTTTCTGCTGTTGAAGATTTTGGTGTCTCACATATAAAGCTTAAGgtgcattatctgaatttacaaaaatattagatattttatttgttattggaagtttctatggtttgagggcgagccctg--gtgcagcggtaaagttgtgcct---
upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 22
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttccta---tgcttgtttgctctatacttactgttagcagtcttgactgcgccat--gcaggcagtccctacaggctggcgccatctctgtccctatc
|| |||||||||| |||||||| |||||||||||||| || ||| | |||||||| |||||||| ||||| ||||| |||| || ||||||| ||||||| | || | | | | ||| ||| || | || | | | || | | | | | || ||| ||| | | | | ||||
GATCTTGAAGGAGCATAAGAATCCTAAGGTTCTTAGTGAGGGAATTTTGTGGATGGTTTCTGCTGTTGAAGATTTTGGTGTCTCACATATAAAGCTTAAGgtgcattatctgaatttacatatttttaagatattttatttttgtattttttattacattttttgttggaagtttctatggtttaatgtaaatcctgttttgcag
upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G35630.1 (Arabidopsis thaliana), 5'ss of exon 22
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgt---gcgctttcctatgcttgtttgctct-atacttactgttagcagtct---tgactgcgccatgcaggcagtccctaca--ggctggcgccatctctgtccctatc------
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AATCATGAAAGAGCACAAGAATCCCAAGGTTCTTAGTGAAGGCTTGTTATGGATGGTTTCGGCAGTTGATGACTTTGGTGTCTCACTTTTGAAACTTAAGgttttgaagatttttctacttggaaattcccatatcctgatttccctgtttatgtaactgcagtatctaggttattaatattatgacccaggagacttttgtgttcatttggcag
upper sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv10s0116g00460.t01 (Vitis vinifera), 5'ss of exon 13
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctt--tcctatgcttgt-ttgctcta--tacttactgttagcagtcttgactgcgccatgcaggcagtccct-acaggctggcgccatctctgtccctatc---------------------------
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AATCATGAAAGAGCACAAGAATCCAAAGGTCCTTAGTGAGGGCATCTTGTGGATGGTTTCAGCAGTTGAAGACTTTGGTGTTTCACATTTGAAACTAAAGgtgttcctaattcttttcttgtgttgttatggctattca-tgtttgtttccatctttggtaggtgttatcaattctttacatcctgattacttacttgacaa-ataaatgagaagccgtttttattctcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19350672|gb|BM895204.1|BM895204EST: GGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAT GACATGATTGATTTTTGCAAAGACATCGGTCTTCAGTCTAGTGCTGCTGTA
genomic: GGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttc ... tttgttccagGACATGATTGATTTTTGCAAAGACATCGGTCTTCAGTCTAGTGCTGCTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttcctatgcttgtttgctctatacttactgttagcagtcttgactgcgccatgcaggcagtccctacaggctggcgccatctctgtccctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA