ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag

Basic information

species	Zea mays
transcript	GRMZM2G008327_T01
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 4

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatgg-aagtatttttcag
||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      |||      | ||| |      | |     ||||  | ||    ||  | || || |      |  |   || ||  | | |   | |||| |             |||||||    ||||  |||| |||||||| ||||| |  || ||||||| |||||||||||||
TCAGAATTTATTGATAGATCGGCGTACTAATACACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACATTTACTCATGAGgtac------tata----gatttgtgttcaacatt-----ttgttttcttcataaagtacatttttt------tttc---gtcataaagttc---atttttcattt----------accttttc---tatacactag-cacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 3

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatgg-aagtatttttcag
||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||      |||      | ||| |      | | ||  || | |         |||  | ||| |      |   ||||||           || |||| |             |||||||    ||||  |||| |||||||| ||||| |  || ||||||| |||||||||||||
TCAGAATTTATTGATAGATCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACGTTTACTCACGAGgtac------tata----gatttgtgttcaacattttgttttcttc-------ataaagtacattttttttcgtcataaagtt-----------catttttcattt----------accttttc---tatacactag-cacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 4

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || || || ||||||||||| || |||||| |||||||||||||||| ||||| || || ||||||||||| ||||||||| | || ||||| ||||||||       || ||  ||| |||     ||    ||| | |  |  || |   || || || ||||  | ||||          ||| ||       ||   |    ||| |  |  | || ||||                                                     
ACAGAATTTGTTGATAGATCGCCGTACTAATTCACTGAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACCTTTACACATGAGgt-------ttgtgtgctaccttatatgagcttctct-agtcat--tgatgcagataataaaattgaaatggat----------tggcttt------ttcacaagaaaatgatatgccattatgct-----------------------------------------------------

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 4

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || || || ||||||||||| || |||||| |||| ||||||||||| ||||| || || ||||||||||| ||||||||| | |||||||| ||||||||       || ||  ||| |||   | | |   |   | |  |||   |    | || || ||||  | | |||    || |     || |||  |   |       || || |  |||| ||||||                                                   
ACAGAATTTGTTGATAGATCGCCGTACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACATTTACACATGAGgt-------ttgtgtcctacctt---atatgtgcttctagtcatcca--tgcatataataaaattgaaatgaatg----agct-----tttccatgagaat-------atgacatgcccttatgctgt---------------------------------------------------

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || || || |||||||||||  |||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||  | |||||||| ||||||||       || ||  ||| ||||           |||  || |    || |  | ||  | | | |||    |       ||||| | |   | ||    ||| |     | | | | ||||                                                        
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt-------ttgtgtgctaccttgta---------ctgggttcttaccttggatataattaaactttgaaat-taatgggcttatgtactag-agaagaaatactc-----atgcagcatttt--------------------------------------------------------

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagt-tatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || || || |||||||||||  ||| ||||||||| || |||||||| ||||| || || ||||| ||||||||||||||  | |||||||| ||||||||   | || ||  || ||   || |    |   |  ||  |       |   ||||  |||      |    | | | ||| ||   | ||   ||   |||                                                                             
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgta--ctgggttctgaccttggatataattaaattttgaaattaatgcg--catatgtactagagtataaatactcatgcagcatttt----------------------------------------------------------------------------

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G48750.1 (Arabidopsis thaliana), 5'ss of exon 5

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || || || ||||| ||||| ||||| ||  ||||||||||||| || |||||  | ||||| ||||| || || |||||| | |||||||||||||||||||         ||| ||      |        |    ||  ||| |||| |     |||| || ||   |    ||          | |  |  | | | |    ||| | |||   |    |                                                      
ACAGAATTTGTTGATTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTATCCCTGTCAGGACATTTACTCATGAGgtac---caaagagctttattccttg--------ttcatatgttcccgttatg-----aaatcttttggctggctgcat---------tccttatgagtgtaatgtaaattaagtattataccac------------------------------------------------------

upper sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 5

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattccca-caatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag
 || |||||| | |||||||| || || |||||| | ||||| ||||||||||| || || || |||||||| ||||||||  | |||||||| |||||||||   |   | |||   ||   | |  |     ||   ||  |  |        |     ||||   |    |   ||  ||      ||  | ||||||||  |                                                                          
CCAGAACTTACTCATAGATCGTCGTACCAATGCATTAAAGCTGGCAGACTTTGGATTGGCAAGAGCATTTGGTATTCCTGTTAGGACATTTACACATGAGgta---tcaatgtgc---aatccgtgtgacctcttccacatgatttttcctctttacttggtatttgcatctttaataatatttgattatcatatcaattttttgc--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78089349|gb|DV517723.1|DV517723

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|17921690|gb|BM259341.1|BM259341

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAA
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAA

EST: gi|60394106|gb|DN226976.1|DN226976

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|87152029|gb|DY396818.1|DY396818

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|76017100|gb|DT944270.1|DT944270

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|5525740|gb|AI861633.1|AI861633

EST:     AATTCCTGTCCGT-CATTTACTCATGAG                         GTAGTGCCATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: AATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|76017014|gb|DT944184.1|DT944184

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|211200718|gb|FL344211.1|FL344211

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|149096226|gb|EE181929.2|EE181929

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|18171336|gb|BM341176.1|BM341176

EST:     TCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|60394498|gb|DN227368.1|DN227368

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|31362736|gb|CD447093.1|CD447093

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|60345525|gb|DN212498.1|DN212498

EST:     ATTTGGAATTCCTGTCCAGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTATGCTTGGAGCGCGGCAG
genomic: ATTTGGAATTCCTGTCC-GTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|60346409|gb|DN213382.1|DN213382

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|7216555|gb|AW562677.1|AW562677

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGAGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|86470531|gb|DY236901.1|DY236901

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|148933262|gb|EC876914.2|EC876914

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGGGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|211484592|gb|FL266361.1|FL266361

EST:     GGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: GGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|60397309|gb|DN230125.1|DN230125

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|4966783|gb|AI691639.1|AI691639

EST:     TTTACTCAT-AG                         GTAGTG-CATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGAGGCAG
genomic: TTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|50337361|gb|CO532487.1|CO532487

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|71768728|gb|DR966665.1|DR966665

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|5739730|gb|AI947306.1|AI947306

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|61118625|gb|DN559586.1|DN559586

EST:     CTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: CTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|17930906|gb|BM267866.1|BM267866

EST:     CAGGGCATTT-GAATTTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: CAGGGCATTTGGAA-TTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|17930325|gb|BM267285.1|BM267285

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|93281356|gb|EB673620.1|EB673620

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|6526696|gb|AW215985.1|AW215985

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

EST: gi|18163033|gb|BM332872.1|BM332872

EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 245

TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGTATTCCACACCAGTTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAA

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 149

Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 97