Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag

Basic information

species Zea mays
transcript GRMZM2G007871_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g24180.1 (Oryza sativa), 5'ss of exon 5
TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaat-tttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag
 || |||||  |||||| |||||||||||||||||| || |||||||||||| |||||||||| || |||||||| ||||||||||| ||||| || ||||||||||   ||||  |   || | |      | | | | |||||  | | ||    ||||| ||||   || |  ||  ||    ||| ||    ||||| || | |||
CAAGTACTTTGTTGAATTTATATCCAAGGCATATCAGGCTTTAACTGATCCTGTATCTCGTGAAAACTATGAGAAGTATGGTCACCCAGATGGACGCCAGgtaatatggacatctgttattcttgacactctacttaaaactaaacatatacatgtgatgtttcatgg--tgttcgagacaaacattaacacggtgtgtttgtggtccag

upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 5
TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag
 || |||||| |||| || ||  |||| || ||||||||  | || ||||| ||| ||||||| |||||||| |||||||| || ||||||||  ||||||||||            | | | ||| ||       |  ||||| |    |   |  | ||   |  ||     | |||   |    ||||||  | ||||   | |||
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaat------------aaaacataaggttatggaaaatgctaagtggctcgttatct-ttttgtttac-----atgctgttgaaatatacatgatattta-attgcag

upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G08830.2 (Glycine max), 5'ss of exon 5
TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag
 || |||||| |||| || ||  |||| || ||||||||  | || ||||| | | ||||||| |||||||| |||||||| || ||||||||  |||||||||||  | ||       ||   ||  |  |||   |      || ||          || ||||  ||| | ||    |   | |  | || || ||   |      
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataa-aacagacgactatgaaaaaatgccaagtggcctgttatctttttgt-----tttcatg--ctgttgaa----atatgcatgatattttattgtag------

upper sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S241_31V6.1 (Physcomitrella patens), 5'ss of exon 4
TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaa-------tattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag
 || |||||| | ||  | ||  | ||||||||||||||| |||| |||||| ||||  | |||||||| ||||| ||||||||||| ||||| || |||||          || |   ||||  |  || ||  |  |  |      | || ||||||||    | |||      |   | |    |||| || |                    
CAAGTACTTCGTGGAGCACATCACGAAGGCATATCAAGCACTAACGGATCCTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAGgtttgcaccttcatcattttcatgtgggccaaactttactgttgataattaactttgcaaccgcggatcctctttgtaacatattggacggctactgttg----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436007|gb|DR817057.1|DR817057
EST:     CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|32838158|gb|CD977836.1|CD977836
EST:     CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|22935564|gb|BU571839.1|BU571839
EST:     TATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAA-GGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: TATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|32837602|gb|CD977280.1|CD977280
EST:     CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: CTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|87156492|gb|DY401281.1|DY401281
EST:     AATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: AATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|87157186|gb|DY401975.1|DY401975
EST:     ATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: ATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
EST: gi|87157024|gb|DY401813.1|DY401813
EST:     AATATGGTCACCCTGATGGGCGGCAG                         GGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT
genomic: AATATGGTCACCCTGATGGGCGGCAGgtaatattag ... tatgattcagGGGCTGCAAATGGGCATTGCTTTGCCCAAGTTTTTACTAAATATTGATGGT