Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt...

Basic information

species Zea mays
transcript GRMZM2G007260_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgt------cactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
||||||| |||||||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||| |||||||   |   |  |            | | | ||||  | ||  || |  || || |||  ||  ||  |      |||||  |||  | | |||||   |  ||
TTTATGCAGATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtttaat-gctttcccctggttgta--gct-cacttgattacaatcatt

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatattt------gtcactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
         ||||||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||| |||||||   |   |  |            | | | ||||  | ||  || |  || || |||  ||  ||  |      |||||  |||  | | |||||   |  ||
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtttaat-gctttcccctggttgta--gct-cacttgattacaatcatt

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: EDO97314 (Chlamydomonas reinhardtii), 5'ss of exon 3
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatgttgaaataaccccattttgttcgat-cactgcctgtctattgtattgctgtaatggattattgtattt----
| |||||||| || ||||| ||  |||||||||| ||||||||||||||||| || ||||| |||||||| ||  |||| || || |||||   |  |      ||   |  |      ||  || | ||   |   | ||| |    ||| || |  |       | ||    | ||  |   |  |      
TGTATGCGGACGGGAGCATTTGCCTGGACATCCTCCAAAACCAGTGGAGTCCCATCTACGACGTTGCGGCCATCCTGACGTCAATCCAGgtgg-gaacgcggcagtgggtgcagggggaatcgtgga-tattgcggatgtgtacaccgcaccgcataccggcc---tcgcccggacgggatgcggcgtccgcat

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ17802 (Selaginella moellendorffii), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatgttgaaata-accccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
||||||| |||||||| || ||  | ||||| || ||||| || |||||||| || |||||||||||||||||  | || || || ||||| ||| |  | ||| || |           ||||| |||| ||    ||    |    ||  ||                                    
TTTATGCTGATGGAAGTATTTGCCTCGACATACTGCAAAATCAATGGAGTCCGATCTACGATGTTGCGGCAATTCTTACGTCCATACAGgt-ttggttttttttctcgc--------ctttgttggaatagactttcttacacttatccatcgcag----------------------------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ16328 (Selaginella moellendorffii), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatgttgaaata-accccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
||||||| |||||||| || ||  | ||||| || ||||| || |||||||| || |||||||||||||||||  | || || || ||||| | | |     || |  |||  | |    ||||| |||| ||    ||    |    ||  ||                                    
TTTATGCTGATGGAAGTATTTGCCTCGACATTCTGCAAAATCAATGGAGTCCGATCTACGATGTTGCGGCAATTCTTACGTCCATACAGgtttggtt-----tttttgctcgcctt----tgttggaatagactttcttacacttacccatcgcag----------------------------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ23951 (Selaginella moellendorffii), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatg-ttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
||||||| ||||||||||| ||| | |||||||| ||||| |||||||| || || || |||||||| |||||| |||| || || ||||| |||||   |  |||    |     |   ||  |  ||      | ||||||||     || || |                                 
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATTTATGATGTTGCCGCAATACTGACATCGATCCAGgt-ttgcttggaagtgttgagctgtgaacactgactccaagtttttctttttgttcttgttcttccag---------------------------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 4
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatg-ttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt
||||||| ||||||||||| ||| | |||||||| ||||| |||||||| || || || |||||||| |||||| |||| || || ||||| |||||   |  |||    |  |  |   ||  |  ||      | ||| ||||  |   ||    || |                             
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATCTATGATGTTGCCGCAATACTGACATCGATCCAGgt-ttgcttgcaagtgttgagctgcgaacactgactccaagtttttcttttcgttc--ttcttgttcttccag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448180|gb|DR829230.1|DR829230
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|18179315|gb|BM380525.1|BM380525
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTTTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|20803162|gb|BQ294212.1|BQ294212
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGC
EST: gi|211160852|gb|FL355935.1|FL355935
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCG
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|37377294|gb|CF625238.1|CF625238
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|211158663|gb|FL318093.1|FL318093
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|113703398|gb|EE680902.1|EE680902
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|94474209|gb|EB703167.1|EB703167
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|89759914|gb|DY688576.1|DY688576
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|74241480|gb|DT649394.1|DT649394
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCANACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|50332498|gb|CO527624.1|CO527624
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTTTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|74241479|gb|DT649393.1|DT649393
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|44900351|gb|CK826896.1|CK826896
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|4624364|gb|AI615197.1|AI615197
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|71299516|gb|DR785767.1|DR785767
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|7031256|gb|AW461144.1|AW461144
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|32857587|gb|CD997268.1|CD997268
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|71299514|gb|DR785766.1|DR785766
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTTTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTTTCCTGCCAATTTTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|211209634|gb|FL170002.1|FL170002
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAAC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAAC
EST: gi|149112233|gb|EE191289.2|EE191289
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|60401065|gb|DN233872.1|DN233872
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|12972475|gb|BG268000.1|BG268000
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|148966066|gb|EE017005.2|EE017005
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|211212200|gb|FL170016.1|FL170016
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|18168064|gb|BM337904.1|BM337904
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|78122431|gb|DV540815.1|DV540815
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|94474208|gb|EB703166.1|EB703166
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|13149803|gb|BG320125.1|BG320125
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|40337033|gb|CK371103.1|CK371103
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|149112232|gb|EE191288.2|EE191288
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|32857308|gb|CD996989.1|CD996989
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|37397476|gb|CF636037.1|CF636037
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|18168754|gb|BM338594.1|BM338594
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|211209644|gb|FL170012.1|FL170012
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCCATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|50332499|gb|CO527625.1|CO527625
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: gi|211500859|gb|FL344778.1|FL344778
EST:     ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatatttgtcactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt

- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - -  GTGGAG