1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTACCGGTAGGCGCAAGTACCTTATGGTAATAGGTATCAACACTGCTTTTAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAGgtttttttttttcatactgggtttcctataaaagtgcctcgtttgctcttgaagcagtttgatggtttaaaacattaactttgaagtaatacttataaccag
species | Zea mays |
transcript | GRMZM2G007185_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAG GGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTGEST: gi|32806480|gb|CD958714.1|CD958714
genomic: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAGgttttttttt ... ttataaccagGGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTG
EST: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAG GGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTGEST: gi|78083170|gb|DV511563.1|DV511563
genomic: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAGgttttttttt ... ttataaccagGGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTG
EST: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAG GGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTG
genomic: TAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAGgttttttttt ... ttataaccagGGGAAATAAGGAAAAAGCTGGAGGAAGAAAGAGGGATCATAGTTCGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACCGGTAGGCGCAAGTACCTTATGGTAATAGGTATCAACACTGCTTTTAGCAGTCGCAAGAGAAGGGATTCTATCCGCAACACCTGGATGCCTACAGgtttttttttttcatactgggtttcctataaaagtgcctcgtttgctcttgaagcagtttgatggtttaaaacattaactttgaagtaatacttataaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA