1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATAAAGATGGGTATGTGAGCAAGGATGAGATGATCCAAGCAATAAACGAGACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttctatttcttggtagctctatacctactagtcttttgtgtaaagtaaaccaccacatttttggttggacaactctcttcctacctactagtc...
species | Zea mays |
transcript | GRMZM2G006790_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGGACA-GAACGGAATGGTGACATTTCA-GGAGTTCCTEST: gi|113675155|gb|DW829924.1|DW829924
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGG-ACAAGAACGGAATGGTGACATT-CAAGGAGTTCCT
EST: ACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCAATGAAAAGATTTG AGGAAATGGACTGGGACEST: gi|50324727|gb|CO519853.1|CO519853
genomic: ACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCA-TGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGAC
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|211062667|gb|FL265119.1|FL265119
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|60399811|gb|DN232621.1|DN232621
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|5928708|gb|AW055925.1|AW055925
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|40334046|gb|CK368116.1|CK368116
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: TACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACEST: gi|60394800|gb|DN227670.1|DN227670
genomic: -ACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGAC
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|74234337|gb|DT642251.1|DT642251
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: GACCACGACAGGAGAGCGCTCTTTTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGTEST: gi|78112680|gb|DV531074.1|DV531074
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
EST: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
genomic: GACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttc ... atggcactagAGGAAATGGACTGGGACAAGAACGGAATGGTGACATTCAAGGAGTTCCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAAGATGGGTATGTGAGCAAGGATGAGATGATCCAAGCAATAAACGAGACCACGACAGGAGAGCGCTCTTCTGGGCCTATAGCCATGAAAAGATTTGgtcagttttctatttcttggtagctctatacctactagtcttttgtgtaaagtaaaccaccacatttttggttggacaactctcttcctacctactagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaaa