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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag...

Basic information

species Zea mays
transcript GRMZM2G006753_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 6
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgc-tagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag-----------------------------------------------------------------------------
|||||| ||  |||||||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| |||| ||||||||||    |   ||  ||| |    || |  | |   |  || |  | ||  ||  |  || |  || |   |   |  || ||||  | |    |||||                                                                             
GCTTTTTTGTTCAATGATTTGCTCAGATCCAAAGCTTGATTCCCATCGCTTTAAAGATATAATTGATGAGGCAATTGCTGAAGgtaaatgattatatgctgttgccatataattttatcatataatattgaatacctttttctattccttttctacaatgaa-gcgctggcaaagtg--tttagcttatcatgctaactcaatctattccctgaaacttctctaatggttaaactcctttccatttccttcccttttgtag

upper sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G31080.1 (Glycine max), 5'ss of exon 6
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag---
||| |||||  ||||| |||| ||||| || || ||||| |||||||| ||||||||||| ||||||||||  || | ||  |||||  | ||   | |   | ||         ||  | | |   || ||  | |   |       | || ||  |||  |   ||  |||  | ||||     
GCTATTCTGTTCAATGCTTTGTTCAGATCCTAAACTTGACTCTCACCGATTCAAGGATATTATTGATGAGGTTATAGCTGCTGgtaagaatatcactatctcttcttgccccaaatttcacgcaga-catttgatctagatgtaggtttcactgttacaaaagttttg--tatagagttttgaata

upper sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| || |||||||| ||||  |  ||||  |   |  || | |  |    |  |   |    |  |  | |   || |||  | ||    ||       | | ||       | ||||       
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacct-atccaggttc--tgatttgtttgtgcataccattgtttaacatctgcag------

upper sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G06910.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaac-acatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag
||| |||||| ||||| ||||||| || || ||||||||||| ||||| ||||| || ||  |||||||||| ||||  | ||||||   |  |   |||| ||| |  ||  ||| |   | ||||    |    |  ||  |  |  | ||  ||  |  ||  || |   |  | || || 
GCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatctttctgtatttagta-tatacgtcttacaagattatcttctcatctatggaatccttgacgttataagatgagcttgccttctatttgtac