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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGTCGTCAGCATCGGAGCTCTGTCCAAGAGGTTCATGCTGCCAGGATGGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacgccacttcttgccatgtctccacattcctctctgcatgcacattcagacgcgcgtctcatggtttcggatcttcgaaag

Basic information

species Zea mays
transcript GRMZM2G006480_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006480_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g42510.2 (Oryza sativa), 5'ss of exon 6
GCCGGTCGTCAGCATCGGAGCTCTGTCCAAGAGGTTCATGCTGCCAGGATGGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacgccacttcttgccatgtctccacattcctctctgcatgcaca-ttcagacgcgcgtctcatggtttcggatcttcgaaag-----
 || ||  ||| ||| ||||| || || ||||  |||||||||||||||||||| || |||||| ||||||||||||| ||||| || || |||||||||||||| || |  |  ||||  ||||| |  | |||| | | || ||| | | |||| |    | | |      ||| | ||||| ||||     
ACCAGTAATCACCATTGGAGCACTATCAAAGAAATTCATGCTGCCAGGATGGCGACTTGGTTGGTTGGCCTTCTGTGACCCCAATGGTGCACTCAAGCATgtaaggca-gtaaactcttttcatgtttttaaattcttgtttgtatgaaaaattcacatttacatattcataattctgttcttcaaaaggtcag

upper sequence: GRMZM2G006480_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g42510.1 (Oryza sativa), 5'ss of exon 4
GCCGGTCGTCAGCATCGGAGCTCTGTCCAAGAGGTTCATGCTGCCAGGATGGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacgccacttcttgccatgtctccacattcctctctgcatgcaca-ttcagacgcgcgtctcatggtttcggatcttcgaaag
 || ||  ||| ||| ||||| || || ||||  |||||||||||||||||||| || |||||| ||||||||||||| ||||| || || |||||||||||||| || |  |  ||||  ||||| |  | |||| | | || ||| | | |||| |    | | |      ||| | ||||| ||||
ACCAGTAATCACCATTGGAGCACTATCAAAGAAATTCATGCTGCCAGGATGGCGACTTGGTTGGTTGGCCTTCTGTGACCCCAATGGTGCACTCAAGCATgtaaggca-gtaaactcttttcatgtttttaaattcttgtttgtatgaaaaattcacatttacatattcataattctgttcttcaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148953483|gb|EE152988.2|EE152988
EST:     GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT                         GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: gi|67020982|gb|CO449731.1|CO449731
EST:     CGGCGCGTTCAAGCAT                         GTCAGGGCTGCGACCGACATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: CGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: gi|86473866|gb|DY240236.1|DY240236
EST:     GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT                         GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: gi|76289527|gb|DV029095.1|DV029095
EST:     GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT                         GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: gi|78089839|gb|DV518213.1|DV518213
EST:     GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT                         GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: gi|76911586|gb|DV164332.1|DV164332
EST:     GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT                         GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC