1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGAAAAATGTTACAGACACTGAGTTGACTGATTTGTTTTCCAAATATGGGAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcctgcaaagaagttgctttccttatgaatggaatgataagcattgcctcaagtgtatattgttagttaactttgctctttgcag
species | Zea mays |
transcript | GRMZM2G005459_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAG CTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTAEST: gi|149074524|gb|EE162922.2|EE162922
genomic: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcct ... ctctttgcagCTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTA
EST: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAG CTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTAEST: gi|148974793|gb|EE025615.2|EE025615
genomic: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcct ... ctctttgcagCTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTA
EST: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAG CTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTAEST: gi|101391173|gb|EB817520.1|EB817520
genomic: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcct ... ctctttgcagCTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTA
EST: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAG CTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTA
genomic: GAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcct ... ctctttgcagCTGGCTGTGCCTTCATTAAATATCAAACAAAAGATCAAGCATTGGCAGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAAAAATGTTACAGACACTGAGTTGACTGATTTGTTTTCCAAATATGGGAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcctgcaaagaagttgctttccttatgaatggaatgataagcattgcctcaagtgtatattgttagttaactttgctctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG