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TCATTCGGTTGGATATTCCGGGGCACTGGCAAAACCTTTGATGGCTTCAGAATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattcagtgatttatttcccaagtcaatgctcagtcatgaaagcgtctctgtgacttttttgtttgttatgataaattatgataaatgtag
species | Zea mays |
transcript | GRMZM2G005036_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|31356317|gb|CD440674.1|CD440674
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|89761459|gb|DY689465.1|DY689465
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|31358559|gb|CD442916.1|CD442916
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGGTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|31354401|gb|CD438758.1|CD438758
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: ATCTGCTGATAA-CCGGTTGGATGTTAGCAGCTGGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGEST: gi|31353102|gb|CD437459.1|CD437459
genomic: ATCTGCTG-TAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAG
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|76912595|gb|DV164810.1|DV164810
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCEST: gi|31354663|gb|CD439020.1|CD439020
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCC
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|148965824|gb|EE016713.2|EE016713
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: ATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGATTTTTGT-GCT GAACATTACACTGCTCEST: gi|148944905|gb|EC890064.2|EC890064
genomic: ATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTT-GTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTC
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTEST: gi|71438038|gb|DR819088.1|DR819088
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACT
EST: GGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|78106581|gb|DV524999.1|DV524999
genomic: GGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAATCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGEST: gi|19822381|gb|BQ048405.1|BQ048405
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAG
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|31349354|gb|CD433711.1|CD433711
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|211159959|gb|FL410900.1|FL410900
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGT-GGATGT-AGCAGCTTGGAGGATTTTGT-GCT GAACAT--CACTGCTCCCAGEST: gi|30031572|gb|CB833423.1|CB833423
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAG
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCATEST: gi|211246196|gb|FL443898.1|FL443898
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
EST: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCT GAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
genomic: AATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattca ... ataaatgtagGAACATTACACTGCTCCCAGGATGGTTCTTGCAGCATCAGGAGTTGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTCGGTTGGATATTCCGGGGCACTGGCAAAACCTTTGATGGCTTCAGAATCTGCTGTAAACCGGTTGGATGTTAGCAGCTTGGAGGAATTTGTTGCTgtaagattcagtgatttatttcccaagtcaatgctcagtcatgaaagcgtctctgtgacttttttgtttgttatgataaattatgataaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA