1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCGAGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTGgtaattaactctgatttcgttgatcttctgttcgtttcatcttgatttggtgacatgcatgttaatacgactgcgtgcatgcgcag
species | Zea mays |
transcript | GRMZM2G004957_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTG ATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGCEST: gi|71427126|gb|DR808176.1|DR808176
genomic: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTGgtaattaact ... gcatgcgcagATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGC
EST: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTG ATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGCEST: gi|50335113|gb|CO530239.1|CO530239
genomic: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTGgtaattaact ... gcatgcgcagATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGC
EST: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTG ATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGC
genomic: AGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTGgtaattaact ... gcatgcgcagATGACGGCGGAGTTCCAGATGCCGTCGCCGCTGGTGCCGACACGTGAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGTGGTCGACGCTGTTCTCAAGCATCGTGTCACGGGCTGCCACCCTCGAGGTGCTCTCCACCGGCGTCGCCGGCAACTACAATGGCGCGCTGCAGCTGgtaattaactctgatttcgttgatcttctgttcgtttcatcttgatttggtgacatgcatgttaatacgactgcgtgcatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG