1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGATCCGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggacatggatgctaacacacattggtgcaattaaagaagtgccctcagtgcagcctaaaacaaagaaatactgctatgaatttagtacatacac...
species | Zea mays |
transcript | GRMZM2G004528_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|211037209|gb|FK948218.1|FK948218
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|13516068|gb|BG518344.1|BG518344
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|31359455|gb|CD443812.1|CD443812
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|31364344|gb|CD448699.1|CD448699
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|60346856|gb|DN213829.1|DN213829
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|211032313|gb|FK948194.1|FK948194
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGRGCAGATCATCAAAGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGCEST: gi|67029746|gb|CO458495.1|CO458495
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggac ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGGTAGTTGTGCTGTGGACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCCGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAGgtattcggacatggatgctaacacacattggtgcaattaaagaagtgccctcagtgcagcctaaaacaaagaaatactgctatgaatttagtacatacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA