Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgacacctaattaatttccatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttg-ctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgaca---cctaattaatttccatttag
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CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttgttttccttgatattgtgttacatttcccattaactggcatgctacagaccctgataagcttcattttag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgac--acctaattaatttccatttag----------------
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CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTAGAGCCCACTAAGgtatgttgctggctcc--atgttcctttatttccactttgataaacaatgaaactggtttcatgaagttgtgtttgttgctgttgtttttcag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgacacctaattaatttccatttag----------
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CCTGGTCCGGATTCTATTGGAATTGTTGCTGTTTCCCGCAACTGTAGTGGCGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGgtattatg-ctgtaatgaagcttattcattgctgaacaa-tgaaaccttgttttattgaactaattgctttccacatcatctcag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgc-----tgattcttcttggtcttgctgtttttttatcttc----tgcagctgtgcgacacctaattaatttccatttag----------
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CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTTGAGCCCACAAAGgtatttaactgtaaccattcattgcagaattattttctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaaatcatctcag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgacacctaattaatttccatttag--------------------------------
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CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgtta--ttggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgc----tgattcttcttggtcttgctgtttttttatcttctgcagct-gtgcgacacctaatt--aatttccatttag
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CCTGGTCCGGATTCTATTGGCATAGTCGCTATTTCGCGCAACTGCAGCGGAATTGCAGCACGTGCCTGCGGCCTCGTGAGTTTAGAACCCATGAAGgtaaagagtgcgatttgttacgttctggct-tgtgtttataatcattagcttacgctagtcttgatttgaaaacaaatatag
upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttat-cttctgcagctgtgcgacaccta-attaatttccatttag
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CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtac-ttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78082046|gb|DV510458.1|DV510458EST: GCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAG GTTGCCGAGATCCTTAAGGATCGCGCATCGTGGTATCGCGATTGTCGGCGT
genomic: GCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgat ... ttccatttagGTTGCCGAGATCCTTAAGGATCGCGCATCGTGGTATCGCGATTGTCGGCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgacacctaattaatttccatttag
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