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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGGAATCACACCTCTTGCCCTAGTATGGAAAGATGAGACCTGTAGCCAGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgtgtcctgttgtttgagtcatattatggccaacacattttgaccattctcgtaacaaaaagaaaagaaaaagatacataaagtattgttatggtcctcaccactgtttttacttaatattttttattgcctttgtttcttcatgtgctatcag

Basic information

species Zea mays
transcript GRMZM2G002361_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002361_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G24880.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCTGGAATCACACCTCTTGCCCTAGTATGGAAAGATGAGACCTGTAGCCAGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgtgtcctgttgtttgagtcatattatggccaacacattttgaccattctcgtaacaaaaagaaaagaaaaagatacataaagtattgttatggtcctcaccactgtttttacttaatattttttattgcctttgtttcttcatgtgctatcag
  ||||||  || ||||| |   |  ||||||| ||||||| |||||| |||||||| ||||||||  | ||||| || ||| | |||| | ||||||||||| ||   |         |||||  || | | |  | | | |||  |     || || || ||||  |   || |  | |  |  |     ||   |  ||| | ||   | | ||  ||   ||| || ||    |                       
TACTGGAAATACTCCTCTGGTGTTGATATGGAAGGATGAGAGCTGTAGTCAGTATGTCATCGATACTGATAACAATGGAGAAGTTCCAAACCAACAACATgtaagtggat---------tttga--cagacttttac-agctcatggt-----ttttcata-caaagtgtttagtattacactccca-----tttacaaagtcttaaca--tatattctctctgtatcttgtaaaaacag---------------------

upper sequence: GRMZM2G002361_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g01420.t01 (Vitis vinifera), 5'ss of exon 4
AGCTGGAATCACACCTCTTGCCCTAGTATGGAAAGATGAGACCTGTAGCCAGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgtgtcctgttgtttgagt-catattatggccaacacattttgaccattctcgtaa--caaaaagaaaagaaaaagatacataaagtattgttatggtcctcaccactgtttttacttaatattttttattgcctttgtttcttcatgtgctatcag
| |||||| |||||| ||  |  | || ||||| ||||||| |||||| |||||||||||||||||  | |  || ||  |  | |||||  ||||||| ||||    |  |    |   |||  | | |||       ||   ||||| |     || ||||  |      |  ||||    | |||| |||| || ||                                                                
AACTGGAAACACACCACTGACATTGGTTTGGAAGGATGAGAACTGTAGTCAGTATGTTATCGATACAGATAGTAAAGGACAGGTTCCAAGTCAACAACAGgtattgtggcattgcataacttgcttgcctatctcaagaaaagaatttttattgc-cttgtaagccccttcaattagaagcttaaacatgaagtctt-ttgc--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348284|gb|DN215257.1|DN215257
EST:     AGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACAT                         CTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT
genomic: AGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgt ... gtgctatcagCTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT
EST: gi|149108582|gb|EE189724.2|EE189724
EST:     AGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACAT                         CTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT
genomic: AGTATGTTATCGATACGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgt ... gtgctatcagCTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT
EST: gi|166666950|gb|EG137899.1|EG137899
EST:     CGAACAACAAGGGTGAAATACCAAGCGAACAACAT                         CTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT
genomic: CGAACAACAAGGGTGAAATACCAAGCGAACAACATgtatgtctgt ... gtgctatcagCTTGTGTTGGAGCTGCTAGAAGATGGAAAGGTGGTTACTTCAGATGATCCT