1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATTGATCTTCTGAAGGATAAACAAGCCCTTCAGAGGCTTACTGAGGCAGCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctacttttagtgtatttacgcagtgtttaaacttgaacaatgttctgctctgctgttgatctacattatttcaaattgcttatttctgaatacattaaattcag
species | Zea mays |
transcript | GRMZM2G001500_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAG CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACEST: gi|211323721|gb|FL059667.1|FL059667
genomic: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctact ... ttaaattcagCCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAAC
EST: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAG CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCEST: gi|211323718|gb|FL059664.1|FL059664
genomic: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctact ... ttaaattcagCCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGC
EST: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAG CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACEST: gi|211323719|gb|FL059665.1|FL059665
genomic: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctact ... ttaaattcagCCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAAC
EST: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAG CCTACCATTCATTACTGCTACTGCTGATGGGCCAAEST: gi|211323722|gb|FL059668.1|FL059668
genomic: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctact ... ttaaattcagCCTACCATTCATTACTGCTACTGCTGATGGGCCAA
EST: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAG CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAA
genomic: GCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctact ... ttaaattcagCCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGATCTTCTGAAGGATAAACAAGCCCTTCAGAGGCTTACTGAGGCAGCAGAGAAAGCTAAGATGGAACTGTCAACGCTGACACAGGCAAATATTAGgtaggctacttttagtgtatttacgcagtgtttaaacttgaacaatgttctgctctgctgttgatctacattatttcaaattgcttatttctgaatacattaaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA