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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccacccaattttcttatttctttattcttcctggaaaccctcctatttatgtttaatagactgaagattgcttttctttctaacgataatcag

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000749_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g06190.1 (Oryza sativa), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgt------gtaaattagggtcaataa-taccatgattctgattct-----gc-cacccaattttcttatttctttattcttcctggaaaccctcctatttatgtttaatagactgaagattg--cttttctttctaacgataatcag
||||||||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| |       ||   ||     | ||| ||| |  | | |||||||     || |    ||||| | | |||||| ||||| | |  ||| |||| | || |||| | ||| ||||||  |||   ||| |||||||||   || |||
GTAATGCATGGGGCTGATCGTGATATTATGTGGCTCCAACGGGATTTCCACATATATGTTTGCAATCTTTTTGACACAGGACAGgtattttgattaataggctaataatactaaatactaaaactgtgattcttgattgcacctttaatttacctctttcttcattctccttcaaaatcctcattttcatgtcttataaactgaaccttggattttcctttctaactccaaacag

upper sequence: GRMZM2G000749_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G54440.2 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccacccaattttcttatttctttattcttcctggaaaccctcctatttatgtttaatagactgaagattgcttttctttctaacgataatcag
||||| ||||| || ||||| ||||| || ||||| || ||||||||   ||| ||||| |||||||||||||||||||||||||| ||    | ||  ||| | |       |  || |||    | ||    | ||     | | |    ||  | |   |   | | | ||  |  | |||  |  ||||| ||                       
GTAATCCATGGAGCAGATCGAGATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGgtttg----atttctggttatt-------ttgttttgacatggtcatattacttggaggtgtatgagatcaccttaacagaacccattttggtagt-aatgta--gaagaatga----------------------

upper sequence: GRMZM2G000749_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccacccaattttcttatttctttattcttcctggaaaccctcctatttatgtttaatagactgaagattgcttttctttctaacgataatcag
||||||||||| || ||||| ||||| || ||||| || |||||||||  ||| ||||| |||||||| ||||||||||||||||| ||  |   ||   | | || ||    |  || |   | || ||     | |      |     || |    |  | | | | |   || || || ||                                    
GTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGgtttgattttgtttcag-cgatgatcttctatttttttctatgacatttcctgtaaaacataggagatccagtatccataacatacaccttttgctttatg-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338799|gb|DN205772.1|DN205772
EST:     TCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAG                         GCTTCAAGGGTCTTACAGATGGAGAGAAACAGCCTTGAGCACCTATTGCTT
genomic: TCCAGCGGGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaa ... cgataatcagGCTTCAAGGGTCTTACAGATGGAGAGAAACAGCCTTGAGCACCTATTGCTT