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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCCGCCGGCTTCACAACTGgtatggtaggaaaggatggctaggcacccagacctgcgaacatgttgtgttcaccttcagctactatttcttccattcatccgttattaggggtgtttgg...

Basic information

species Zea mays
transcript GRMZM2G000510_T04
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179369|gb|DV549742.1|DV549742
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|31349105|gb|CD433462.1|CD433462
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211209142|gb|FL374139.1|FL374139
EST:     AAGATAGCCGCCGG-TTCACAACTG                         GTGCYATCGCTATCAGCATCGCCAACCCTACT
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACT
EST: gi|211047692|gb|FL371292.1|FL371292
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCG
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCG
EST: gi|76291091|gb|DV030659.1|DV030659
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|22545542|gb|BU097901.1|BU097901
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211227505|gb|FL377297.1|FL377297
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|12045964|gb|BF727999.1|BF727999
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|149110174|gb|EE293989.2|EE293989
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|76911479|gb|DV164289.1|DV164289
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211415548|gb|FL372632.1|FL372632
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCGTCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211234205|gb|FK951233.1|FK951233
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTTACTGACCTTGTCAAGGTCAGG
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCT-ACTGACCTTGTCAAGGTCAGG
EST: gi|211253778|gb|FL369138.1|FL369138
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|50324459|gb|CO519585.1|CO519585
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|78109062|gb|DV527479.1|DV527479
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|67028232|gb|CO456981.1|CO456981
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|76292715|gb|DV032283.1|DV032283
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|71437614|gb|DR818664.1|DR818664
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211285989|gb|FL388300.1|FL388300
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|78108615|gb|DV527033.1|DV527033
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTC
EST: gi|6827024|gb|AW330667.1|AW330667
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|148947408|gb|EC892822.2|EC892822
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|71437391|gb|DR818441.1|DR818441
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|148932353|gb|EC875981.2|EC875981
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|148986615|gb|EE030385.2|EE030385
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCCTCGCTATCAACATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|88751922|gb|DY536063.1|DY536063
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|31348998|gb|CD433355.1|CD433355
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|50333857|gb|CO528983.1|CO528983
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|149072257|gb|EE160513.2|EE160513
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|76294190|gb|DV033758.1|DV033758
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|76281516|gb|DV021084.1|DV021084
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|93015136|gb|EB640656.1|EB640656
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|148954532|gb|EC899968.2|EC899968
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|89249688|gb|DY621474.1|DY621474
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|93281478|gb|EB673742.1|EB673742
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|71303282|gb|DR787744.1|DR787744
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|71332543|gb|DR803241.1|DR803241
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|211234204|gb|FK951232.1|FK951232
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCA
EST: gi|149014447|gb|EE044057.2|EE044057
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|31363588|gb|CD447945.1|CD447945
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|148931428|gb|EC874386.2|EC874386
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
EST: gi|71447490|gb|DR828540.1|DR828540
EST:     AAGATAGCCGCCGGCTTCACAACTG                         GTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC
genomic: AAGATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 110

ATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACTGG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 311

ATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACTGG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 371

ATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACTGG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 244

ATAGCCGCCGGCTTCACAACTGgtatggtagg ... tgaattgaagGTGCCATCGCTATCAGCATCGCCAACCCTACTGACCTTGTCAAGGTCAGGCTCCAGGCCGAGGGCAAGCTTGCGCCTGGTGTGCCACGCCGCTACACTGG