1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATTACAAATGGGCCTGTCACAGGAAGGGCTGGTGATGTGCTTGCTGCTGCCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgtttttgcaaagcccaaagttttgtttcacaagttatattttatcaatcattgttcccttatccttaagcatatatctttgaaagatgtttcaagtggtgatctaactaagtatttcctttctcattttttacatgtactgatttgttcatttcgttggtatttatatatatatatatatatatattcag
species | Zea mays |
transcript | AC233895.1_FGT001 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|31351014|gb|CD435371.1|CD435371
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|22549146|gb|BU101347.1|BU101347
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|32850813|gb|CD990494.1|CD990494
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|22542895|gb|BU093333.1|BU093333
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTEST: gi|84980121|gb|DW530470.1|DW530470
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATT
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|32931969|gb|CF036781.1|CF036781
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|87155627|gb|DY400416.1|DY400416
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|22819488|gb|BU499578.1|BU499578
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|87157252|gb|DY402041.1|DY402041
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|32838111|gb|CD977789.1|CD977789
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|32838243|gb|CD977921.1|CD977921
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|32850802|gb|CD990483.1|CD990483
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|26559653|gb|CA831888.1|CA831888
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|22473335|gb|BU037815.1|BU037815
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|111990961|gb|EE332393.1|EE332393
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|26559180|gb|CA831415.1|CA831415
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGCEST: gi|33092800|gb|CF052794.1|CF052794
genomic: CCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
EST: GCGGCTTGTGAGACCTGGGAAGAAA AATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
genomic: GCGGCTTGTGAGACCTGGGAAGAAAgtaagtgttt ... atatattcagAATAAGGATGTTACTGAAGCAATTCAGAAAGTTGCTGCTGCTTATGATTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTACAAATGGGCCTGTCACAGGAAGGGCTGGTGATGTGCTTGCTGCTGCCAACACAGCAGCAGAAGTCGCAATGCGGCTTGTGAGACCTGGGAAGAAAgtaagtgtttttgcaaagcccaaagttttgtttcacaagttatattttatcaatcattgttcccttatccttaagcatatatctttgaaagatgtttcaagtggtgatctaactaagtatttcctttctcattttttacatgtactgatttgttcatttcgttggtatttatatatatatatatatatatattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA